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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272932 (27 seq.)
>W1712110499
NJIG01000011
Betaproteobacteria
Achromobacter marplatensis [NJIG]
18411
18487
+
Val
GAC
[ENA]
¡û
>WENV183730067
PJTR01000491
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
19518
19442
-
Val
GAC
[ENA]
¢þ
>WENV183730744
PJTS01000488
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
9419
9495
+
Val
GAC
[ENA]
¢þ
>WENV183742087
PJUH01000219
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
19518
19594
+
Val
GAC
[ENA]
¢þ
>WENV183742706
PJUI01000061
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
178037
177961
-
Val
GAC
[ENA]
¢þ
>WENV170622820
FUWD013122401
[FUWD] metagenome; unknown
716
640
-
Val
GAC
[ENA]
¢þ
>WENV170631038
FUWD013335979
[FUWD] metagenome; unknown
716
640
-
Val
GAC
[ENA]
¢þ
>WENV170708172
LNAP01055355
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1410
1334
-
Val
GAC
[ENA]
¢þ
>C181111274
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
3307806
3307882
+
Val
GAC
-
¡û
>C191084099
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
1987474
1987550
+
Val
GAC
-
¡û
>C191129204
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
2330803
2330879
+
Val
GAC
-
¡û
>C191205193
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
573733
573657
-
Val
GAC
-
¡û
>W1911566212
PCOQ01000039
Betaproteobacteria
Achromobacter sp. MYb9 [PCOQ]
23824
23900
+
Val
GAC
[ENA]
¡û
>W1810270680
PREU01000015
Betaproteobacteria
Achromobacter spanius 6 [PREU]
156178
156102
-
Val
GAC
[ENA]
¡û
>W1810720817
QNRM01000009
Betaproteobacteria
Achromobacter marplatensis CECT 7342 [QNRM]
129533
129457
-
Val
GAC
[ENA]
¡û
>SRA1025271
SRR035084.535341
454 Sequencing (SRP001805)
239
163
-
Val
GAC
[SRA]
>SRA1036642
SRR035089.570422
454 Sequencing (SRP001810)
34
110
+
Val
GAC
[SRA]
>SRA1053545
SRR035098.433972
454 Sequencing (SRP001819)
300
224
-
Val
GAC
[SRA]
>W10115875
ADMS01000059
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
3384
3460
+
Val
GAC
[ENA]
¡û
>W11120372
ADMS01000059
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
3384
3460
+
Val
GAC
[ENA]
¡û
>W1511591850
LBHW01000057
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
6287
6211
-
Val
GAC
[ENA]
¡û
>W1511707498
LGVG01000028
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
59343
59267
-
Val
GAC
[ENA]
¡û
>C161051098
CP013111
Betaproteobacteria
Bordetella sp. N [CP013111]
2884443
2884367
-
Val
GAC
[Ensembl]
¡û
>W121111219
ALJE01000036
Betaproteobacteria
Achromobacter marplatensis HLE [ALJE]
141132
141056
-
Val
GAC
[ENA]
¡û
>W1610070645
BCTK01000015
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
257626
257550
-
Val
GAC
[ENA]
¡û
>W1610093593
CYTC01000002
Betaproteobacteria
Achromobacter kerstersii ATCC31444 [CYTC]
851736
851660
-
Val
GAC
[ENA]
¡û
>W1710068018
BCTK01000015
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
257626
257550
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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