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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272983 (13 seq.)
>W1711396491
MEUS01000029
Unclassified
candidate division WWE3 bacterium RBG_13_37_7 [MEUS]
3969
3894
-
Ala
CGC
[ENA]
¡û
>W1711396577
MEVO01000001
Unclassified
candidate division WWE3 bacterium RIFOXYA1_FULL_40_11 [MEVO]
853568
853643
+
Ala
CGC
[ENA]
¡û
>W1711396756
MEVT01000008
Unclassified
candidate division WWE3 bacterium RIFOXYA2_FULL_46_9 [MEVT]
63605
63680
+
Ala
CGC
[ENA]
¡û
>W1711396796
MEVU01000001
Unclassified
candidate division WWE3 bacterium RIFOXYB1_FULL_40_22 [MEVU]
853568
853643
+
Ala
CGC
[ENA]
¡û
>W1711396945
MEVY01000007
Unclassified
candidate division WWE3 bacterium RIFOXYB2_FULL_41_6 [MEVY]
9863
9788
-
Ala
CGC
[ENA]
¡û
>W1711397035
MEWA01000031
Unclassified
candidate division WWE3 bacterium RIFOXYC1_FULL_39_7 [MEWA]
3665
3590
-
Ala
CGC
[ENA]
¡û
>W1711397065
MEWB01000001
Unclassified
candidate division WWE3 bacterium RIFOXYC1_FULL_40_10 [MEWB]
853568
853643
+
Ala
CGC
[ENA]
¡û
>W1711397176
MEWE01000003
Unclassified
candidate division WWE3 bacterium RIFOXYC2_FULL_40_11 [MEWE]
34536
34611
+
Ala
CGC
[ENA]
¡û
>W1711397291
MEWG01000039
Unclassified
candidate division WWE3 bacterium RIFOXYD1_FULL_39_9 [MEWG]
43124
43199
+
Ala
CGC
[ENA]
¡û
>W1711397317
MEWH01000002
Unclassified
candidate division WWE3 bacterium RIFOXYD1_FULL_40_11 [MEWH]
89009
89084
+
Ala
CGC
[ENA]
¡û
>WENV181171867
OEIV010385868
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
246
171
-
Ala
CGC
[ENA]
¡û
>WENV170609482
FUWD011408543
[FUWD] metagenome; unknown
80
5
-
Ala
CGC
[ENA]
¡û
>WENV170661417
JXWV01023183
[JXWV] soil metagenome; rice field; organic FYM Plot
167
92
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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