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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272992 (5 seq.)
>W1711397640
MEXA01000004
Unclassified
Candidatus Adlerbacteria bacterium RIFOXYB1_FULL_48_10 [MEXA]
24512
24587
+
Lys
TTT
[ENA]
¡û
>W1711397673
MEXB01000004
Unclassified
Candidatus Adlerbacteria bacterium RIFOXYC1_FULL_48_26 [MEXB]
50662
50737
+
Lys
TTT
[ENA]
¡û
>W1711397719
MEXC01000013
Unclassified
Candidatus Adlerbacteria bacterium RIFOXYD1_FULL_48_8 [MEXC]
4261
4186
-
Lys
TTT
[ENA]
¡û
>WENV180298304
OBJA01263565
[OBJA] soil metagenome; sediment, water from around vicinity
172
245
+
Lys
TTT
[ENA]
¡û
>WENV170955023
MJUJ01005468
[MJUJ] soil metagenome; viral particles from soil sample CN
1724
1649
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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