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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273024 (5 seq.)
>W2030001451
BJKB01000018
Bacteroidota
Gelidibacter sp. Bio7-1 [BJKB]
20808
20883
+
Val
GAC
[ENA]
¡û
>W2030038902
SDDZ01000017
Bacteroidota
Gelidibacter gilvus IC158 [SDDZ]
25445
25520
+
Val
GAC
[ENA]
¡û
>W2030051593
VORX01000013
Bacteroidota
Gelidibacter salicanalis IC162 [VORX]
18145
18220
+
Val
GAC
[ENA]
¡û
>W2130031795
JAGEVG010000022
Bacteroidota
Gelidibacter pelagius DF109 [JAGEVG]
44014
43939
-
Val
GAC
[ENA]
¡û
>W133004757
AUHD01000017
Bacteroidota
Gelidibacter mesophilus DSM 14095 [AUHD]
8775
8850
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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