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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273030 (31 seq.)
>W1710861342
LMDN01000006
Actinomycetota
Leifsonia sp. Root4 [LMDN]
14616
14692
+
Pro
TGG
[ENA]
¡û
>W131208630
ATIA01000059
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
172640
172716
+
Pro
TGG
[ENA]
¡û
>W131216939
ATWH01000006
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
271619
271543
-
Pro
TGG
[ENA]
¡û
>C171127454
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2118303
2118227
-
Pro
TGG
-
¡û
>w013957
AAOB01000003
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
202960
202887
-
Pro
TGG
[ENA]
¡û
>WENV180016624
FSVO01000063
[FSVO] metagenome; soil
2382
2456
+
Pro
TGG
[ENA]
¢þ
>WENV170784308
MCHG01000706
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
2643
2719
+
Pro
TGG
[ENA]
¢þ
>C191071489
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
43505
43581
+
Pro
TGG
-
¡û
>C191139348
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
891898
891824
-
Pro
TGG
-
¡û
>W1910784631
MPZN01000053
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
12917
12993
+
Pro
TGG
[ENA]
¡û
>W1910785515
MQTR01000170
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
48088
48164
+
Pro
TGG
[ENA]
¡û
>W1910857497
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
1276915
1276989
+
Pro
TGG
[ENA]
¡û
>W1910857544
NBXA01000014
Actinomycetota
Subtercola boreus P27444 [NBXA]
8201
8275
+
Pro
TGG
[ENA]
¡û
>W1910857588
NBXB01000017
Actinomycetota
Subtercola boreus P27479 [NBXB]
39192
39266
+
Pro
TGG
[ENA]
¡û
>W1910857630
NBXC01000012
Actinomycetota
Subtercola boreus P27924 [NBXC]
151872
151946
+
Pro
TGG
[ENA]
¡û
>W1910857673
NBXD01000012
Actinomycetota
Subtercola boreus P27979 [NBXD]
151872
151946
+
Pro
TGG
[ENA]
¡û
>W1910857716
NBXE01000017
Actinomycetota
Subtercola boreus P28004 [NBXE]
151860
151934
+
Pro
TGG
[ENA]
¡û
>W1911798597
QYRT01000044
Actinomycetota
Subtercola vilae DB165 [QYRT]
12234
12308
+
Pro
TGG
[ENA]
¡û
>W1810090195
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1321166
1321240
+
Pro
TGG
[ENA]
¡û
>W1810168895
PJJP01000039
Actinomycetota
Cryobacterium sp. N22 [PJJP]
317779
317703
-
Pro
TGG
[ENA]
¡û
>W1810242595
PPXD01000007
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
378041
377965
-
Pro
TGG
[ENA]
¡û
>W1810242655
PPXE01000022
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
314514
314438
-
Pro
TGG
[ENA]
¡û
>W1810242701
PPXF01000058
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
653689
653613
-
Pro
TGG
[ENA]
¡û
>W1810277327
PSTT01000047
Actinomycetota
Subtercola sp. Z020 [PSTT]
10339
10265
-
Pro
TGG
[ENA]
¡û
>W1810627283
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
959809
959733
-
Pro
TGG
[ENA]
¡û
>W1511432352
JUGL01000012
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
448996
449072
+
Pro
TGG
[ENA]
¡û
>C161067225
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
1068226
1068302
+
Pro
TGG
[Ensembl]
¡û
>C161095701
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
2233923
2233847
-
Pro
TGG
[Ensembl]
¡û
>W121043535
AHWA01000002
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
627587
627511
-
Pro
TGG
[ENA]
¡û
>W1610723688
LMDN01000006
Actinomycetota
Leifsonia sp. Root4 [LMDN]
14616
14692
+
Pro
TGG
[ENA]
¡û
>W1710520663
FNFU01000011
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
47819
47895
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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