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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273099 (13 seq.)
>WENV170496944
CEVS01117813
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
174
251
+
Arg
TCG
[ENA]
¡û
>WENV170530879
CEWK01069760
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14296
14373
+
Arg
TCG
[ENA]
¡û
>WENV170796376
MDSV01163448
[MDSV] marine metagenome; seawater
8835
8758
-
Arg
TCG
[ENA]
¡û
>WENV170809758
MDSW01137662
[MDSW] marine metagenome; seawater
8511
8588
+
Arg
TCG
[ENA]
¡û
>WENV170832244
MDSZ01058241
[MDSZ] marine metagenome; seawater
976
1053
+
Arg
TCG
[ENA]
¡û
>WENV170844733
MDTA01011366
[MDTA] marine metagenome; seawater
6527
6604
+
Arg
TCG
[ENA]
¡û
>WENV170855603
MDTA01208888
[MDTA] marine metagenome; seawater
1
78
+
Arg
TCG
[ENA]
¡û
>WENV170884803
MDTC01190019
[MDTC] marine metagenome; seawater
11612
11535
-
Arg
TCG
[ENA]
¡û
>WENV170889053
MDTC01268615
[MDTC] marine metagenome; seawater
2650
2573
-
Arg
TCG
[ENA]
¡û
>WENV170895687
MDTD01083258
[MDTD] marine metagenome; seawater
4167
4090
-
Arg
TCG
[ENA]
¡û
>WENV170900380
MDTD01153531
[MDTD] marine metagenome; seawater
1782
1859
+
Arg
TCG
[ENA]
¡û
>WENV170938944
MDTG01317450
[MDTG] marine metagenome; seawater
3335
3258
-
Arg
TCG
[ENA]
¡û
>WENV003336
AACY020090876
Marine microbial communities from Global Ocean Sampling (GOS)
913
834
-
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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