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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273160 (111 seq.)
>W1710785146
LJHP01000011
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
71425
71349
-
Arg
ACG
[ENA]
¡û
>W1710785493
LJHX01000069
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
7354
7278
-
Arg
ACG
[ENA]
¡û
>W1710856784
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292377
292453
+
Arg
ACG
[ENA]
¡û
>W1710856785
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292525
292601
+
Arg
ACG
[ENA]
¡û
>W1710856856
LLZR01000011
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
133241
133165
-
Arg
ACG
[ENA]
¡û
>W1710856857
LLZR01000011
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
133089
133013
-
Arg
ACG
[ENA]
¡û
>W1710869744
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
71913
71989
+
Arg
ACG
[ENA]
¡û
>W1710869745
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
72036
72112
+
Arg
ACG
[ENA]
¡û
>W1710876460
LMPG01000001
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
56087
56011
-
Arg
ACG
[ENA]
¡û
>W1710876487
LMPG01000014
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
74623
74547
-
Arg
ACG
[ENA]
¡û
>W1710879467
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
1097999
1098075
+
Arg
ACG
[ENA]
¡û
>W1711069417
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
290609
290533
-
Arg
ACG
[ENA]
¡û
>W1711705041
MSQB01000018
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
46408
46484
+
Arg
ACG
[ENA]
¡û
>C171049912
CP016460
Alphaproteobacteria
Blastomonas sp. RAC04 [CP016460]
1050986
1051062
+
Arg
ACG
-
¡û
>C171056555
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
497390
497466
+
Arg
ACG
-
¡û
>C171056556
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
497516
497592
+
Arg
ACG
-
¡û
>C171108850
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
245809
245885
+
Arg
ACG
-
¡û
>C171115154
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1382378
1382302
-
Arg
ACG
-
¡û
>W131046823
AMSR01000017
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
38845
38769
-
Arg
ACG
[ENA]
¡û
>W131058869
ANFZ01000009
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
408594
408670
+
Arg
ACG
[ENA]
¡û
>W131098367
AORL01000019
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
79066
78990
-
Arg
ACG
[ENA]
¡û
>W131160205
AQWK01000002
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
227284
227360
+
Arg
ACG
[ENA]
¡û
>W131213848
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
3061293
3061217
-
Arg
ACG
[ENA]
¡û
>W131216120
ATVO01000006
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
289480
289556
+
Arg
ACG
[ENA]
¡û
>C027933
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1932233
1932309
+
Arg
ACG
[Ensembl]
¡û
>w022270
AAWJ01000001
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [AAWJ]
965823
965750
-
Arg
ACG
[ENA]
¡û
>WENV180020031
FTCV01000835
[FTCV] metagenome; soil
23832
23756
-
Arg
ACG
[ENA]
¢þ
>WENV180020032
FTCV01000835
[FTCV] metagenome; soil
23701
23625
-
Arg
ACG
[ENA]
¢þ
>WENV180038932
LLBY010013759
[LLBY] soil metagenome; soil from tomato rhizosphere
7933
7857
-
Arg
ACG
[ENA]
¢þ
>WENV180253775
OBEQ010575441
[OBEQ] groundwater metagenome; groundwater
333
257
-
Arg
ACG
[ENA]
¢þ
>W141077983
ATHL01000156
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
106
182
+
Arg
ACG
[ENA]
¡û
>W141077984
ATHL01000156
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
236
312
+
Arg
ACG
[ENA]
¡û
>C08007322
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
337190
337266
+
Arg
ACG
[Ensembl]
¡û
>WENV183724258
PJQE01003926
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
2600
2524
-
Arg
ACG
[ENA]
¢þ
>WENV183726701
PJTO01000080
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
87330
87254
-
Arg
ACG
[ENA]
¢þ
>WENV183726702
PJTO01000080
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
87211
87135
-
Arg
ACG
[ENA]
¢þ
>WENV183726703
PJTO01000080
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
87076
87000
-
Arg
ACG
[ENA]
¢þ
>WENV183733142
PJTY01000113
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
12883
12959
+
Arg
ACG
[ENA]
¢þ
>WENV183733143
PJTY01000113
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
13002
13078
+
Arg
ACG
[ENA]
¢þ
>WENV183733144
PJTY01000113
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
13136
13212
+
Arg
ACG
[ENA]
¢þ
>WENV183738126
PJUD01088190
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
79
3
-
Arg
ACG
[ENA]
¢þ
>WENV183738242
PJUD01133350
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
9
85
+
Arg
ACG
[ENA]
¢þ
>WENV183739041
PJUE01001131
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1494
1418
-
Arg
ACG
[ENA]
¢þ
>WENV183739042
PJUE01001131
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1375
1299
-
Arg
ACG
[ENA]
¢þ
>WENV183739043
PJUE01001131
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1240
1164
-
Arg
ACG
[ENA]
¢þ
>WENV170023187
BCQK01150863
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
316
240
-
Arg
ACG
[ENA]
¢þ
>WENV170550931
CXWF01051748
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4524
4448
-
Arg
ACG
[ENA]
¢þ
>WENV170556972
CXWL01016945
[CXWL] groundwater metagenome; biofilm material
33106
33030
-
Arg
ACG
[ENA]
¢þ
>W141484915
JFYZ01000001
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
446904
446980
+
Arg
ACG
[ENA]
¡û
>W141484916
JFYZ01000001
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
447030
447106
+
Arg
ACG
[ENA]
¡û
>W141485005
JFZA02000056
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
69563
69639
+
Arg
ACG
[ENA]
¡û
>C181088869
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1947988
1948064
+
Arg
ACG
-
¡û
>C181088920
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1940572
1940648
+
Arg
ACG
-
¡û
>C181089247
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1934573
1934649
+
Arg
ACG
-
¡û
>C191017399
CP020083
Alphaproteobacteria
Blastomonas fulva T2 [CP020083]
3054838
3054914
+
Arg
ACG
-
¡û
>C191145594
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1932179
1932255
+
Arg
ACG
-
¡û
>C191145645
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1932179
1932255
+
Arg
ACG
-
¡û
>C191145696
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1932179
1932255
+
Arg
ACG
-
¡û
>W09133984
ACQU01000013
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
31556
31480
-
Arg
ACG
[ENA]
¡û
>W141819195
JQMC01000023
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
5892
5968
+
Arg
ACG
[ENA]
¡û
>W1910182426
BJMW01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
14721
14797
+
Arg
ACG
[ENA]
¡û
>C141008811
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1468199
1468123
-
Arg
ACG
[Ensembl]
¡û
>SRA1014936
SRR023845.390250
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
202
126
-
Arg
ACG
[SRA]
>SRA1015800
SRR023846.205004
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
48
124
+
Arg
ACG
[SRA]
>C151004613
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1467286
1467210
-
Arg
ACG
[Ensembl]
¡û
>C151004664
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1467985
1467909
-
Arg
ACG
[Ensembl]
¡û
>C151054332
CP009571
Alphaproteobacteria
Sphingomonas taxi ATCC 55669 [CP009571]
543179
543255
+
Arg
ACG
[Ensembl]
¡û
>C151073189
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
1519144
1519220
+
Arg
ACG
[Ensembl]
¡û
>W1510012846
BBNP01000050
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
189900
189976
+
Arg
ACG
[ENA]
¡û
>W1510012847
BBNP01000050
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
190027
190103
+
Arg
ACG
[ENA]
¡û
>W1510012848
BBNP01000050
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
190154
190230
+
Arg
ACG
[ENA]
¡û
>C10114597
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
1470234
1470158
-
Arg
ACG
[Ensembl]
¡û
>W1511352514
JROG01000003
Alphaproteobacteria
Sphingomonas sp. 35-24ZXX 35-24ZXX 35-24zxx [JROG]
361799
361875
+
Arg
ACG
[ENA]
¡û
>W1511352580
JROH01000039
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
1294
1218
-
Arg
ACG
[ENA]
¡û
>W11151074
AEWJ01000041
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
264999
264923
-
Arg
ACG
[ENA]
¡û
>C121003157
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1483153
1483077
-
Arg
ACG
[Ensembl]
¡û
>C121015271
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1444538
1444462
-
Arg
ACG
[Ensembl]
¡û
>C161003423
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
1695969
1695893
-
Arg
ACG
[Ensembl]
¡û
>W121081063
AKFJ01000012
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
108697
108773
+
Arg
ACG
[ENA]
¡û
>W121081064
AKFJ01000012
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
108818
108894
+
Arg
ACG
[ENA]
¡û
>W121086711
AKKE01000037
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
68102
68178
+
Arg
ACG
[ENA]
¡û
>W121086712
AKKE01000037
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
68226
68302
+
Arg
ACG
[ENA]
¡û
>W121119225
ALVC01000126
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
39737
39661
-
Arg
ACG
[ENA]
¡û
>W121119226
ALVC01000126
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
39611
39535
-
Arg
ACG
[ENA]
¡û
>W1610071206
BCTW01000020
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
55842
55918
+
Arg
ACG
[ENA]
¡û
>W1610076689
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
157973
157897
-
Arg
ACG
[ENA]
¡û
>W1610076698
BCYY01000008
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
30413
30337
-
Arg
ACG
[ENA]
¡û
>W1610076943
BCZD01000014
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
30496
30572
+
Arg
ACG
[ENA]
¡û
>W1610590971
LDRW01000007
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
35204
35128
-
Arg
ACG
[ENA]
¡û
>W1610614801
LGJH01000060
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
129
53
-
Arg
ACG
[ENA]
¡û
>W1610614820
LGJH01000152
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
112734
112658
-
Arg
ACG
[ENA]
¡û
>W1610648952
LJHP01000011
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
71425
71349
-
Arg
ACG
[ENA]
¡û
>W1610649299
LJHX01000069
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
7354
7278
-
Arg
ACG
[ENA]
¡û
>W1610719165
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292377
292453
+
Arg
ACG
[ENA]
¡û
>W1610719166
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
292525
292601
+
Arg
ACG
[ENA]
¡û
>W1610719237
LLZR01000011
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
133241
133165
-
Arg
ACG
[ENA]
¡û
>W1610719238
LLZR01000011
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
133089
133013
-
Arg
ACG
[ENA]
¡û
>W1610732090
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
71913
71989
+
Arg
ACG
[ENA]
¡û
>W1610732091
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
72036
72112
+
Arg
ACG
[ENA]
¡û
>W1610738806
LMPG01000001
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
56087
56011
-
Arg
ACG
[ENA]
¡û
>W1610738833
LMPG01000014
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
74623
74547
-
Arg
ACG
[ENA]
¡û
>W1610741813
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
1097999
1098075
+
Arg
ACG
[ENA]
¡û
>W1610909945
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
290609
290533
-
Arg
ACG
[ENA]
¡û
>W1710068571
BCTW01000020
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
55842
55918
+
Arg
ACG
[ENA]
¡û
>W1710074378
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
157973
157897
-
Arg
ACG
[ENA]
¡û
>W1710074387
BCYY01000008
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
30413
30337
-
Arg
ACG
[ENA]
¡û
>W1710074632
BCZD01000014
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
30496
30572
+
Arg
ACG
[ENA]
¡û
>W1710512363
FMZJ01000001
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
22115
22191
+
Arg
ACG
[ENA]
¡û
>W1710710251
LDRW01000007
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
35204
35128
-
Arg
ACG
[ENA]
¡û
>W1710736047
LGJH01000060
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
129
53
-
Arg
ACG
[ENA]
¡û
>W1710736066
LGJH01000152
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
112734
112658
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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