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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273217 (12 seq.)
>WENV010916
AACY020296454
Marine microbial communities from Global Ocean Sampling (GOS)
1204
1127
-
Ile
GAT
[ENA]
>WENV180051431
MPLU02214310
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
721
646
-
Ile
GAT
[ENA]
¡û
>WENV180110601
OAPN01001254
[OAPN] marine metagenome; 2011
867
943
+
Ile
GAT
[ENA]
¡û
>WENV180388718
OBPH01072684
[OBPH] marine metagenome; Sterile flask
116
191
+
Ile
GAT
[ENA]
¡û
>WENV180396875
OBPW01021669
[OBPW] marine metagenome; seawater
158
83
-
Ile
GAT
[ENA]
¡û
>WENV180590202
OCOS01149863
[OCOS] marine metagenome; Sterile flask
69
144
+
Ile
GAT
[ENA]
¡û
>WENV181367501
OFQB01004245
[OFQB] freshwater metagenome; Freshwater Lake
158
82
-
Ile
GAT
[ENA]
¡û
>WENV019301
AACY020529794
Marine microbial communities from Global Ocean Sampling (GOS)
1393
1470
+
Ile
GAT
[ENA]
>WENV183805998
PVBE011074248
[PVBE] marine metagenome; water
1638
1563
-
Ile
GAT
[ENA]
¡û
>WENV170554044
CXWK01044408
[CXWK] wastewater metagenome; activated sludge
400
325
-
Ile
GAT
[ENA]
¡û
>C181021315
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
9214
9290
+
Ile
GAT
-
¡û
>WENV076808
AACY024110464
Marine microbial communities from Global Ocean Sampling (GOS)
100
23
-
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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