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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273242 (10 seq.)
>W1711405735
MGDB01000148
Unclassified
Candidatus Schekmanbacteria bacterium GWA2_38_11 [MGDB]
15356
15428
+
Glu
CTC
[ENA]
¡û
>W1711405764
MGDC01000035
Unclassified
Candidatus Schekmanbacteria bacterium GWA2_38_9 [MGDC]
4410
4484
+
Glu
CTC
[ENA]
¡û
>W1711405856
MGDF01000072
Unclassified
Candidatus Schekmanbacteria bacterium RBG_16_38_11 [MGDF]
15844
15918
+
Glu
CTC
[ENA]
¡û
>C191175063
CP040098
Thermodesulfobacteriota
Desulfoglaeba alkanexedens ALDC [CP040098]
408229
408304
+
Glu
CTC
-
¡û
>W1910720413
MGDG01000034
Unclassified
Candidatus Schekmanbacteria bacterium RIFCSPHIGHO2_02_FULL_38_11 [MGDG]
12079
12153
+
Glu
CTC
[ENA]
¡û
>W1910720447
MGDH01000007
Unclassified
Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 [MGDH]
8401
8327
-
Glu
CTC
[ENA]
¡û
>W1910720513
MGDI01000025
Unclassified
Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_12_FULL_38_15 [MGDI]
8064
7990
-
Glu
CTC
[ENA]
¡û
>W2010853839
MGDG01000034
Unclassified
Candidatus Schekmanbacteria bacterium RIFCSPHIGHO2_02_FULL_38_11 [MGDG]
12079
12153
+
Glu
CTC
[ENA]
¡û
>W2010853873
MGDH01000007
Unclassified
Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_02_FULL_38_14 [MGDH]
8401
8327
-
Glu
CTC
[ENA]
¡û
>W2010853939
MGDI01000025
Unclassified
Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_12_FULL_38_15 [MGDI]
8064
7990
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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