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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273308 (22 seq.)
>W1711170179
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
93920
93996
+
Cys
GCA
[ENA]
¡û
>w019757
AAUK01000035
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
125
203
+
Cys
GCA
[ENA]
¡û
>WENV180014025
FPIC01031704
[FPIC] soil metagenome; Soil
7262
7338
+
Cys
GCA
[ENA]
¢þ
>WENV180014374
FQKF010000101
[FQKF] soil metagenome; Soil
8419
8495
+
Cys
GCA
[ENA]
¢þ
>WENV181226203
OFDK01000204
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2212
2288
+
Cys
GCA
[ENA]
¢þ
>WENV181285340
OFGS01000004
[OFGS] hot springs metagenome; Water and soil
45320
45244
-
Cys
GCA
[ENA]
¢þ
>WENV181408902
OGCH01021688
[OGCH] hot springs metagenome; hot springs
1019
943
-
Cys
GCA
[ENA]
¢þ
>C08005011
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
737249
737176
-
Cys
GCA
[Ensembl]
¡û
>W09113926
ABZD01000006
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
132149
132225
+
Cys
GCA
[ENA]
¡û
>C09106819
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
1220238
1220162
-
Cys
GCA
[Ensembl]
¡û
>W1910573560
JPMG01000063
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
5731
5655
-
Cys
GCA
[ENA]
¡û
>W1910573591
JPMH01000054
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
3466
3390
-
Cys
GCA
[ENA]
¡û
>C151078480
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
1079637
1079561
-
Cys
GCA
[Ensembl]
¡û
>W1511355460
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
801845
801769
-
Cys
GCA
[ENA]
¡û
>C121009875
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
243764
243840
+
Cys
GCA
[Ensembl]
¡û
>C161035003
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
237495
237419
-
Cys
GCA
[Ensembl]
¡û
>C161071262
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
276295
276371
+
Cys
GCA
[Ensembl]
¡û
>W121010850
AGJO01000005
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
35428
35352
-
Cys
GCA
[ENA]
¡û
>W1610520953
JGCK01000044
Thermotogota
Kosmotoga sp. DU53 [JGCK]
8081
8005
-
Cys
GCA
[ENA]
¡û
>W1710517621
FNDL01000041
Thermotogota
Fervidobacterium changbaicum [FNDL]
3637
3561
-
Cys
GCA
[ENA]
¡û
>W1710593332
FRDJ01000002
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
113205
113281
+
Cys
GCA
[ENA]
¡û
>W1710617203
JGCK01000044
Thermotogota
Kosmotoga sp. DU53 [JGCK]
8081
8005
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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