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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27331 (50 seq.)
>W1710785418
LJHV01000010
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
74283
74372
+
Ser
CGA
[ENA]
¡û
>W131058801
ANFX01000042
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
2444
2533
+
Ser
CGA
[ENA]
¡û
>W1711073721
LSIV01000265
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
2123
2034
-
Ser
CGA
[ENA]
¡û
>W1711073950
LSJB01000307
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
1536
1447
-
Ser
CGA
[ENA]
¡û
>W1711074284
LSJJ01000155
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
2631
2720
+
Ser
CGA
[ENA]
¡û
>W1711074308
LSJK01000034
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
2639
2728
+
Ser
CGA
[ENA]
¡û
>W1711074545
LSJQ01000174
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
1564
1475
-
Ser
CGA
[ENA]
¡û
>W1711074637
LSJS01000132
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
1511
1422
-
Ser
CGA
[ENA]
¡û
>W1711074926
LSJZ01000042
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
26882
26793
-
Ser
CGA
[ENA]
¡û
>W1711075229
LSKF01000114
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
3260
3171
-
Ser
CGA
[ENA]
¡û
>W1711075531
LSKM01000074
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
2491
2580
+
Ser
CGA
[ENA]
¡û
>W1711075690
LSKQ01000088
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
2649
2738
+
Ser
CGA
[ENA]
¡û
>W1711385222
MEDW01000043
Alphaproteobacteria
Erythrobacter sp. SCN 62-14 [MEDW]
463
374
-
Ser
CGA
[ENA]
¡û
>W1711766312
MUYG01000011
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
526814
526903
+
Ser
CGA
[ENA]
¡û
>W1711766444
MUYJ01000016
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
48366
48455
+
Ser
CGA
[ENA]
¡û
>W1711766473
MUYK01000003
Alphaproteobacteria
Erythrobacter colymbi [MUYK]
213015
212926
-
Ser
CGA
[ENA]
¡û
>W1711793271
MWLM01000054
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
25574
25663
+
Ser
CGA
[ENA]
¡û
>C171057345
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
2654785
2654696
-
Ser
CGA
-
¡û
>WENV180103600
OAPA01083769
[OAPA] marine metagenome; ENVO:00002010
88
-1
-
Ser
CGA
[ENA]
¡û
>WENV181227088
OFDN01001655
[OFDN] hot springs metagenome; Water
2483
2572
+
Ser
CGA
[ENA]
¡û
>WENV181234663
OFEU01001037
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
8215
8126
-
Ser
CGA
[ENA]
¡û
>WENV183749774
PPFU01211923
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2846
2757
-
Ser
CGA
[ENA]
¡û
>WENV170668312
LADL02002750
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1781
1870
+
Ser
CGA
[ENA]
¡û
>WENV170711757
LNFM01007123
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7040
6951
-
Ser
CGA
[ENA]
¡û
>C181069579
CP022600
Alphaproteobacteria
Porphyrobacter sp. HT-58-2 [CP022600]
2977736
2977647
-
Ser
CGA
-
¡û
>C191188820
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
1716249
1716338
+
Ser
CGA
-
¡û
>W141820305
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
2131191
2131280
+
Ser
CGA
[ENA]
¡û
>W1810195458
PKRO01000008
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
3404
3315
-
Ser
CGA
[ENA]
¡û
>W2010308599
CABWKV010000001
Alphaproteobacteria
Novosphingobium sp. 9U [CABWKV]
304439
304350
-
Ser
CGA
[ENA]
¡û
>W2010435618
JAAALE010000013
Alphaproteobacteria
Porphyrobacter sp. SLTP [JAAALE]
60327
60238
-
Ser
CGA
[ENA]
¡û
>W2010722877
JACICE010000004
Alphaproteobacteria
Erythromicrobium ramosum DSM 8510 [JACICE]
118062
117973
-
Ser
CGA
[ENA]
¡û
>W2012438621
WTYB01000004
Alphaproteobacteria
Erythromicrobium ramosum JCM 10282 [WTYB]
159038
159127
+
Ser
CGA
[ENA]
¡û
>W2110050104
BMZD01000003
Alphaproteobacteria
Novosphingobium arvoryzae KCTC 32422 [BMZD]
534291
534380
+
Ser
CGA
[ENA]
¡û
>C231161322
CP078091
Alphaproteobacteria
Porphyrobacter sp. ULC335 [CP078091]
3190885
3190796
-
Ser
CGA
-
¡û
>C231596816
CP117516
Alphaproteobacteria
Erythrobacter sp. BLCC-B19 [CP117516]
286772
286683
-
Ser
CGA
-
¡û
>C231620082
CP119316
Alphaproteobacteria
Sphingomonadaceae bacterium [CP119316]
2946256
2946345
+
Ser
CGA
-
¡û
>C241328095
CP136573
Alphaproteobacteria
Erythrobacter sp. [CP136573]
97218
97307
+
Ser
CGA
-
¡û
>C161093703
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
198879
198790
-
Ser
CGA
[Ensembl]
¡û
>C161099927
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
1089801
1089890
+
Ser
CGA
[Ensembl]
¡û
>W1610649224
LJHV01000010
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
74283
74372
+
Ser
CGA
[ENA]
¡û
>W1610913026
LSIV01000265
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
2123
2034
-
Ser
CGA
[ENA]
¡û
>W1610913255
LSJB01000307
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
1536
1447
-
Ser
CGA
[ENA]
¡û
>W1610913589
LSJJ01000155
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
2631
2720
+
Ser
CGA
[ENA]
¡û
>W1610913613
LSJK01000034
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
2639
2728
+
Ser
CGA
[ENA]
¡û
>W1610913850
LSJQ01000174
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
1564
1475
-
Ser
CGA
[ENA]
¡û
>W1610913942
LSJS01000132
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
1511
1422
-
Ser
CGA
[ENA]
¡û
>W1610914231
LSJZ01000042
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
26882
26793
-
Ser
CGA
[ENA]
¡û
>W1610914534
LSKF01000114
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
3260
3171
-
Ser
CGA
[ENA]
¡û
>W1610914836
LSKM01000074
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
2491
2580
+
Ser
CGA
[ENA]
¡û
>W1610914995
LSKQ01000088
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
2649
2738
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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