This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27333 (17 seq.)
>W1711229639
LXYP01000045
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
316724
316635
-
Ser
TGA
[ENA]
¡û
>WENV181323606
OFKY01015886
[OFKY] marine metagenome; sea ice
193
282
+
Ser
TGA
[ENA]
¡û
>WENV182559014
OJDN01042940
[OJDN] seawater metagenome; Sea water
292
381
+
Ser
TGA
[ENA]
¡û
>WENV182561228
OJDV01017903
[OJDV] seawater metagenome; Sea water
536
625
+
Ser
TGA
[ENA]
¡û
>WENV182585717
OJHI01001855
[OJHI] seawater metagenome; Sea water
621
532
-
Ser
TGA
[ENA]
¡û
>WENV183617238
OOEE01113517
[OOEE] marine metagenome; sea ice
307
218
-
Ser
TGA
[ENA]
¡û
>WENV170668014
LADL02000129
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
26125
26036
-
Ser
TGA
[ENA]
¡û
>C181062132
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
812405
812494
+
Ser
TGA
-
¡û
>C181068260
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3133045
3133134
+
Ser
TGA
-
¡û
>W2010308767
CABWKY010000001
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
1022664
1022575
-
Ser
TGA
[ENA]
¡û
>W2011231675
PYIA01000025
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
33653
33742
+
Ser
TGA
[ENA]
¡û
>C211295910
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
225575
225664
+
Ser
TGA
-
¡û
>C231232426
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
1933979
1933890
-
Ser
TGA
-
¡û
>C241149595
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
437065
437154
+
Ser
TGA
-
¡û
>C161073977
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1692154
1692065
-
Ser
TGA
[Ensembl]
¡û
>W1611013509
LXYP01000045
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
316724
316635
-
Ser
TGA
[ENA]
¡û
>W1710593925
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
574539
574450
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK