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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273339 (15 seq.)
>W1711138698
LVEB01000054
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
6941
6865
-
Pro
GGG
[ENA]
¡û
>WENV170575418
FLZN01000004
[FLZN] jellyfish metagenome; jellyfish
33666
33742
+
Pro
GGG
[ENA]
¡û
>WENV170575456
FLZO01000005
[FLZO] jellyfish metagenome; jellyfish
33666
33742
+
Pro
GGG
[ENA]
¡û
>WENV170596469
FUHP01000005
[FUHP] jellyfish metagenome; jellyfish
117933
117857
-
Pro
GGG
[ENA]
¡û
>WENV170873720
MDTB01236609
[MDTB] marine metagenome; seawater
1003
1079
+
Pro
GGG
[ENA]
¡û
>WENV171003978
OBEO01000005
[OBEO] jellyfish metagenome; jellyfish
117933
117857
-
Pro
GGG
[ENA]
¡û
>WENV024803
AACY020837890
Marine microbial communities from Global Ocean Sampling (GOS)
346
267
-
Pro
GGG
[ENA]
>W1910209077
FLYO01000008
Chlamydiota
Chlamydiales bacterium SCGC AG-110-M15 [FLYO]
27260
27184
-
Pro
GGG
[ENA]
¡û
>W2010377488
FLYO01000008
Chlamydiota
Chlamydiales bacterium SCGC AG-110-M15 [FLYO]
27260
27184
-
Pro
GGG
[ENA]
¡û
>W2110138183
JAAEJV010000085
Chlamydiota
Candidatus Neptunochlamydia vexilliferae K9 [JAAEJV]
5002
4928
-
Pro
GGG
[ENA]
¡û
>C211324870
CP073762
Chlamydiota
Simkaniaceae bacterium [CP073762]
275158
275234
+
Pro
GGG
-
¡û
>C211324934
CP073763
Chlamydiota
Simkaniaceae bacterium [CP073763]
269276
269200
-
Pro
GGG
-
¡û
>C10105602
CP001928
Chlamydiota
Waddlia chondrophila WSU 86-1044 [CP001928]
2033418
2033494
+
Pro
GGG
[Ensembl]
¡û
>C11120921
FR872582
Chlamydiota
Simkania negevensis Z [FR872582]
70671
70747
+
Pro
GGG
[Ensembl]
¡û
>W1610949738
LVEB01000054
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
6941
6865
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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