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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273341 (5 seq.)
>WENV181842502
OGVT01003518
[OGVT] freshwater metagenome; freshwater
160
85
-
Val
GAC
[ENA]
¡û
>WENV181845521
OGVX01003557
[OGVX] freshwater metagenome; freshwater
784
709
-
Val
GAC
[ENA]
¡û
>WENV181847877
OGVZ01000508
[OGVZ] freshwater metagenome; freshwater
5741
5666
-
Val
GAC
[ENA]
¡û
>WENV181854365
OGWK01000761
[OGWK] freshwater metagenome; freshwater
2491
2566
+
Val
GAC
[ENA]
¡û
>WENV024937
AACY020849572
Marine microbial communities from Global Ocean Sampling (GOS)
690
769
+
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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