This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2734 (56 seq.)
>W1710891320
LNCS01000012
Betaproteobacteria
Achromobacter xylosoxidans [LNCS]
277257
277162
-
SeC
TCA
[ENA]
¡û
>W1711107620
LTSZ01000013
Betaproteobacteria
Achromobacter xylosoxidans HMSC057D05 [LTSZ]
9328
9233
-
SeC
TCA
[ENA]
¡û
>W1711466599
MJMN01000001
Betaproteobacteria
Achromobacter xylosoxidans [MJMN]
1140901
1140806
-
SeC
TCA
[ENA]
¡û
>W1711466660
MJMO01000002
Betaproteobacteria
Achromobacter xylosoxidans [MJMO]
265381
265286
-
SeC
TCA
[ENA]
¡û
>C171115515
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3620079
3620174
+
SeC
TCA
-
¡û
>WENV183733539
PJTY01003982
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1698
1603
-
SeC
TCA
[ENA]
¢þ
>C181053234
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
3675117
3675212
+
SeC
TCA
-
¡û
>C181088592
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3366659
3366754
+
SeC
TCA
-
¡û
>C191012237
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
4185567
4185472
-
Sec
TCA
-
¡û
>C191026967
CP024172
Betaproteobacteria
Bordetella hinzii H720 [CP024172]
1956790
1956885
+
Sec
TCA
-
¡û
>C191085271
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3945550
3945645
+
Sec
TCA
-
¡û
>C191209792
LR134382
Betaproteobacteria
Bordetella hinzii NCTC13199 [LR134382]
3190306
3190211
-
Sec
TCA
-
¡û
>W142000468
AWNL01000037
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
30506
30601
+
seC
TCA
[ENA]
¡û
>W142000469
AWNM01000008
Betaproteobacteria
Bordetella hinzii ATCC 51730 [AWNM]
74104
74009
-
seC
TCA
[ENA]
¡û
>W142000808
JHEM01000019
Betaproteobacteria
Bordetella hinzii OH87 BAL007II [JHEM]
63096
63191
+
seC
TCA
[ENA]
¡û
>W142000810
JHEO01000125
Betaproteobacteria
Bordetella hinzii CA90 BAL1384 [JHEO]
57738
57643
-
seC
TCA
[ENA]
¡û
>W142000813
JHEQ01000001
Betaproteobacteria
Bordetella hinzii 5132 [JHEQ]
191301
191396
+
seC
TCA
[ENA]
¡û
>W142000815
JHES01000096
Betaproteobacteria
Bordetella hinzii 1277 [JHES]
180501
180406
-
seC
TCA
[ENA]
¡û
>W142000634
BBJQ01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
274584
274489
-
seC
TCA
[ENA]
¡û
>W1910237045
FPJN01000113
Betaproteobacteria
Bordetella pseudohinzii [FPJN]
624
719
+
Sec
TCA
[ENA]
¡û
>W1910891010
NEVR01000001
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
945536
945441
-
Sec
TCA
[ENA]
¡û
>W1810583904
QEXO01000003
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
410832
410927
+
Sec
TCA
[ENA]
¡û
>C152000153
CP012076
Betaproteobacteria
Bordetella hinzii F582 [CP012076]
4608471
4608376
-
SeC
TCA
[Ensembl]
¡û
>C152000154
CP012077
Betaproteobacteria
Bordetella hinzii H568 [CP012077]
4554207
4554112
-
SeC
TCA
[Ensembl]
¡û
>W1520001052
JQCV01000003
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
86634
86539
-
SeC
TCA
[ENA]
¡û
>W1520001386
JZBR01000001
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
307521
307426
-
SeC
TCA
[ENA]
¡û
>W1511642028
LDVJ01000038
Betaproteobacteria
Achromobacter xylosoxidans A-8 [LDVJ]
11545
11640
+
SeC
TCA
[ENA]
¡û
>W1511680913
LFHA01000008
Betaproteobacteria
Achromobacter xylosoxidans CF304 [LFHA]
258363
258268
-
SeC
TCA
[ENA]
¡û
>C161106089
LN831029
Betaproteobacteria
Achromobacter xylosoxidans NCTC10807 [LN831029]
374604
374699
+
SeC
TCA
[Ensembl]
¡û
>C162000054
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
2770746
2770651
-
SeC
TCA
[Ensembl]
¡û
>W1610093299
CYSW01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608629 [CYSW]
26527
26622
+
SeC
TCA
[ENA]
¡û
>W1610093379
CYSY01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608632 [CYSY]
140681
140586
-
SeC
TCA
[ENA]
¡û
>W1610094068
CYTL01000011
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608630 [CYTL]
26614
26709
+
SeC
TCA
[ENA]
¡û
>W1610094174
CYTN01000018
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608622 [CYTN]
92965
92870
-
SeC
TCA
[ENA]
¡û
>W1610094266
CYTP01000012
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608609 [CYTP]
133280
133185
-
SeC
TCA
[ENA]
¡û
>W1610094652
CYTX01000013
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
26623
26718
+
SeC
TCA
[ENA]
¡û
>W1610094748
CYTZ01000007
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663429 [CYTZ]
252547
252452
-
SeC
TCA
[ENA]
¡û
>W122000204
AKMR01000017
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
21845
21940
+
seC
TCA
[ENA]
¡û
>W1610751716
LNCS01000012
Betaproteobacteria
Achromobacter xylosoxidans [LNCS]
277257
277162
-
SeC
TCA
[ENA]
¡û
>W1610921531
LSUO01000020
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
43042
43137
+
SeC
TCA
[ENA]
¡û
>W1620000925
FKBR01000011
Betaproteobacteria
Bordetella trematum [FKBR]
123038
122943
-
SeC
TCA
[ENA]
¡û
>W1620000927
FKBT01000001
Betaproteobacteria
Bordetella trematum [FKBT]
266658
266753
+
SeC
TCA
[ENA]
¡û
>W1620001621
LRSP01000043
Betaproteobacteria
Bordetella pseudohinzii [LRSP]
30624
30719
+
SeC
TCA
[ENA]
¡û
>W1620001625
LRUJ01000038
Betaproteobacteria
Bordetella hinzii LMG 13501 [LRUJ]
44583
44678
+
SeC
TCA
[ENA]
¡û
>W1720000890
FKBR01000011
Betaproteobacteria
Bordetella trematum [FKBR]
123038
122943
-
SeC
TCA
[ENA]
¡û
>W1720000892
FKBT01000001
Betaproteobacteria
Bordetella trematum [FKBT]
266658
266753
+
SeC
TCA
[ENA]
¡û
>W1720002075
LRSP01000043
Betaproteobacteria
Bordetella pseudohinzii [LRSP]
30624
30719
+
SeC
TCA
[ENA]
¡û
>W1720002079
LRUJ01000038
Betaproteobacteria
Bordetella hinzii LMG 13501 [LRUJ]
44583
44678
+
SeC
TCA
[ENA]
¡û
>W1720003170
MSZQ01000014
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
34953
35048
+
SeC
TCA
[ENA]
¡û
>W1720003177
MTBI01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
572887
572982
+
SeC
TCA
[ENA]
¡û
>W1710096507
CYSW01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608629 [CYSW]
26527
26622
+
SeC
TCA
[ENA]
¡û
>W1710096587
CYSY01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608632 [CYSY]
140681
140586
-
SeC
TCA
[ENA]
¡û
>W1710097217
CYTN01000018
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608622 [CYTN]
92965
92870
-
SeC
TCA
[ENA]
¡û
>W1710097267
CYTP01000012
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608609 [CYTP]
133280
133185
-
SeC
TCA
[ENA]
¡û
>W1710097612
CYTX01000013
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
26623
26718
+
SeC
TCA
[ENA]
¡û
>W1710097708
CYTZ01000007
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663429 [CYTZ]
252547
252452
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK