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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273481 (232 seq.)
>W1710807308
LKCX01000016
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
5168
5244
+
Pro
GGG
[ENA]
¡û
>W1710808914
LKDZ01000008
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
502251
502175
-
Pro
GGG
[ENA]
¡û
>W1710821661
LKTU01000064
Betaproteobacteria
Variovorax paradoxus [LKTU]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1710821711
LKTV01000141
Betaproteobacteria
Variovorax paradoxus [LKTV]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1710821753
LKTW01000118
Betaproteobacteria
Variovorax paradoxus [LKTW]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1710821804
LKTX01000107
Betaproteobacteria
Variovorax paradoxus [LKTX]
20717
20641
-
Pro
GGG
[ENA]
¡û
>W1710821862
LKTY01000144
Betaproteobacteria
Variovorax paradoxus [LKTY]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1710821910
LKTZ01000145
Betaproteobacteria
Variovorax paradoxus [LKTZ]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1710860148
LMCQ01000021
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
148913
148837
-
Pro
GGG
[ENA]
¡û
>W1710861744
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
1168003
1168079
+
Pro
GGG
[ENA]
¡û
>W1710862498
LMEK01000024
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
76255
76179
-
Pro
GGG
[ENA]
¡û
>W1710863083
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
789625
789701
+
Pro
GGG
[ENA]
¡û
>W1710873405
LMMT01000011
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
54303
54227
-
Pro
GGG
[ENA]
¡û
>W1710873502
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
723984
724060
+
Pro
GGG
[ENA]
¡û
>W1710873760
LMNA01000029
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
314308
314384
+
Pro
GGG
[ENA]
¡û
>W1710882315
LMTS01000041
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
3149
3073
-
Pro
GGG
[ENA]
¡û
>W1711074179
LSJH01000330
Betaproteobacteria
Xylophilus ampelinus [LSJH]
30743
30819
+
Pro
GGG
[ENA]
¡û
>W1711123817
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
801764
801688
-
Pro
GGG
[ENA]
¡û
>W1711143348
LVHG01000027
Betaproteobacteria
Variovorax paradoxus [LVHG]
206392
206468
+
Pro
GGG
[ENA]
¡û
>W1711250076
LYMK01000008
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
38673
38749
+
Pro
GGG
[ENA]
¡û
>W1711259817
LYVO01000013
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
4954
4878
-
Pro
GGG
[ENA]
¡û
>W1711386495
MEFM01000015
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
8887
8811
-
Pro
GGG
[ENA]
¡û
>W1711387494
MEGR01000056
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
4670
4594
-
Pro
GGG
[ENA]
¡û
>W1711394891
MESN01000273
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
5651
5727
+
Pro
GGG
[ENA]
¡û
>W1711394988
MESQ01000001
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
73734
73810
+
Pro
GGG
[ENA]
¡û
>W1711395037
MESR01000295
Betaproteobacteria
Burkholderiales bacterium RIFOXYD2_FULL_59_8 [MESR]
6716
6792
+
Pro
GGG
[ENA]
¡û
>W1711409696
MGPB01000021
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
592698
592622
-
Pro
GGG
[ENA]
¡û
>W1711409720
MGPC01000009
Betaproteobacteria
Curvibacter sp. GWA2_64_110 [MGPC]
27765
27689
-
Pro
GGG
[ENA]
¡û
>W1711506641
MKWO01000050
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
13377
13301
-
Pro
GGG
[ENA]
¡û
>W1711581696
MNUL01000050
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
805
729
-
Pro
GGG
[ENA]
¡û
>W1711583971
MNXX01000016
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
1
77
+
Pro
GGG
[ENA]
¡û
>W1711584013
MNXY01000029
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
159
83
-
Pro
GGG
[ENA]
¡û
>W1711709069
MSYM01000016
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
91833
91909
+
Pro
GGG
[ENA]
¡û
>W1711721742
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
103509
103433
-
Pro
GGG
[ENA]
¡û
>W1711751233
MUNO01000050
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
152193
152269
+
Pro
GGG
[ENA]
¡û
>W1711751404
MUNS01000031
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
27292
27216
-
Pro
GGG
[ENA]
¡û
>C171091628
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
1807447
1807523
+
Pro
GGG
-
¡û
>C171091690
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
1891909
1891985
+
Pro
GGG
-
¡û
>C171091726
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
2076926
2077002
+
Pro
GGG
-
¡û
>W131066659
ANOY01001841
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
8990
8914
-
Pro
GGG
[ENA]
¡û
>W131174649
ARIP01000071
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
65992
65916
-
Pro
GGG
[ENA]
¡û
>W131180362
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
996928
996852
-
Pro
GGG
[ENA]
¡û
>C017318
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
2988802
2988726
-
Pro
GGG
[Ensembl]
¡û
>C017341
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2199178
2199254
+
Pro
GGG
[Ensembl]
¡û
>C018592
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
1447387
1447463
+
Pro
GGG
[Ensembl]
¡û
>WENV180031803
FTJS01144802
[FTJS] metagenome; soil
97
21
-
Pro
GGG
[ENA]
¢þ
>WENV180099559
NMRC01017391
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
531
455
-
Pro
GGG
[ENA]
¢þ
>w008215
AAJK01000004
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
173554
173481
-
Pro
GGG
[ENA]
¡û
>WENV180260482
OBEQ011204315
[OBEQ] groundwater metagenome; groundwater
745
669
-
Pro
GGG
[ENA]
¢þ
>WENV180262380
OBEQ011381566
[OBEQ] groundwater metagenome; groundwater
7
83
+
Pro
GGG
[ENA]
¢þ
>WENV180272776
OBEQ012415523
[OBEQ] groundwater metagenome; groundwater
54
130
+
Pro
GGG
[ENA]
¢þ
>WENV180284748
OBID01103740
[OBID] metagenome; sludge
96
172
+
Pro
GGG
[ENA]
¢þ
>WENV180391044
OBPM01002679
[OBPM] marine metagenome; ENVO:00002010
1014
1090
+
Pro
GGG
[ENA]
¢þ
>WENV180692875
OCZS010827647
[OCZS] soil metagenome; soil
214
290
+
Pro
GGG
[ENA]
¢þ
>WENV181227540
OFDN01015210
[OFDN] hot springs metagenome; Water
367
443
+
Pro
GGG
[ENA]
¢þ
>WENV181361131
OFNH01000104
[OFNH] sediment metagenome; Lake sediment
3518
3594
+
Pro
GGG
[ENA]
¢þ
>WENV181363090
OFOS01000001
[OFOS] sediment metagenome; Lake sediment
71318
71394
+
Pro
GGG
[ENA]
¢þ
>WENV181364482
OFOW01000015
[OFOW] sediment metagenome; Lake sediment
9821
9897
+
Pro
GGG
[ENA]
¢þ
>WENV181364531
OFOY01000001
[OFOY] sediment metagenome; Lake sediment
58431
58355
-
Pro
GGG
[ENA]
¢þ
>WENV181364590
OFOZ01000048
[OFOZ] sediment metagenome; Lake sediment
9685
9609
-
Pro
GGG
[ENA]
¢þ
>WENV181364631
OFPA01000002
[OFPA] sediment metagenome; Lake sediment
66995
66919
-
Pro
GGG
[ENA]
¢þ
>WENV181364691
OFPB01000001
[OFPB] sediment metagenome; Lake sediment
71340
71416
+
Pro
GGG
[ENA]
¢þ
>WENV181364800
OFPD01000365
[OFPD] sediment metagenome; Lake sediment
1217
1141
-
Pro
GGG
[ENA]
¢þ
>WENV181364853
OFPE01002707
[OFPE] sediment metagenome; Lake sediment
498
422
-
Pro
GGG
[ENA]
¢þ
>WENV181364912
OFPF01003215
[OFPF] sediment metagenome; Lake sediment
244
168
-
Pro
GGG
[ENA]
¢þ
>WENV181364931
OFPG01000109
[OFPG] sediment metagenome; Lake sediment
2730
2806
+
Pro
GGG
[ENA]
¢þ
>WENV181365000
OFPH01000143
[OFPH] sediment metagenome; Lake sediment
3418
3494
+
Pro
GGG
[ENA]
¢þ
>WENV181365029
OFPI01000006
[OFPI] sediment metagenome; Lake sediment
22850
22926
+
Pro
GGG
[ENA]
¢þ
>WENV181365104
OFPJ01000130
[OFPJ] sediment metagenome; Lake sediment
674
598
-
Pro
GGG
[ENA]
¢þ
>WENV181365132
OFPK01000007
[OFPK] sediment metagenome; Lake sediment
49417
49493
+
Pro
GGG
[ENA]
¢þ
>WENV181365168
OFPL01000003
[OFPL] sediment metagenome; Lake sediment
67344
67268
-
Pro
GGG
[ENA]
¢þ
>WENV181365233
OFPM01000720
[OFPM] sediment metagenome; Lake sediment
579
655
+
Pro
GGG
[ENA]
¢þ
>WENV181365263
OFPN01000002
[OFPN] sediment metagenome; Lake sediment
71334
71410
+
Pro
GGG
[ENA]
¢þ
>WENV181365314
OFPO01000024
[OFPO] sediment metagenome; Lake sediment
14173
14097
-
Pro
GGG
[ENA]
¢þ
>WENV181365390
OFPQ01000129
[OFPQ] sediment metagenome; Lake sediment
1657
1733
+
Pro
GGG
[ENA]
¢þ
>WENV181370098
OFQR01016938
[OFQR] freshwater metagenome; Freshwater Lake
149
73
-
Pro
GGG
[ENA]
¢þ
>WENV181379071
OFRC01017026
[OFRC] wastewater metagenome; Exp Tend CN 10WW
412
488
+
Pro
GGG
[ENA]
¢þ
>WENV181379476
OFRD01002022
[OFRD] wastewater metagenome; Exp Tend CN 100WW
3665
3741
+
Pro
GGG
[ENA]
¢þ
>WENV181384062
OFRH01012248
[OFRH] wastewater metagenome; Exp Tend NO 100WW
255
179
-
Pro
GGG
[ENA]
¢þ
>WENV181414838
OGCL01001672
[OGCL] hot springs metagenome; Hot spring water
8580
8504
-
Pro
GGG
[ENA]
¢þ
>W141142441
AWQR01000018
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
181816
181740
-
Pro
GGG
[ENA]
¡û
>W141170135
AXXE01000012
Betaproteobacteria
Variovorax sp. JGI 0001011-P21 [AXXE]
4580
4656
+
Pro
GGG
[ENA]
¡û
>W141170158
AXXG01000020
Betaproteobacteria
Variovorax sp. JGI 0001016-M12 [AXXG]
20109
20033
-
Pro
GGG
[ENA]
¡û
>WENV181835703
OGVI01010688
[OGVI] freshwater metagenome; freshwater
197
273
+
Pro
GGG
[ENA]
¢þ
>C08007655
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2199178
2199254
+
Pro
GGG
[Ensembl]
¡û
>WENV183668912
ORJL010787069
[ORJL] groundwater metagenome; groundwater
560
484
-
Pro
GGG
[ENA]
¢þ
>WENV183735654
PJUB01000333
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
17787
17711
-
Pro
GGG
[ENA]
¢þ
>WENV183736303
PJUC01000521
[PJUC] soil metagenome; Soil enriched on filter paper
9712
9788
+
Pro
GGG
[ENA]
¢þ
>WENV183741425
PJUG01000010
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
368646
368570
-
Pro
GGG
[ENA]
¢þ
>WENV183741909
PJUH01000006
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
197826
197902
+
Pro
GGG
[ENA]
¢þ
>W141425998
JEMG01000001
Betaproteobacteria
Hylemonella gracilis str. Niagara R [JEMG]
2591253
2591177
-
Pro
GGG
[ENA]
¡û
>WENV170558340
CXWL01064794
[CXWL] groundwater metagenome; biofilm material
5111
5187
+
Pro
GGG
[ENA]
¢þ
>WENV170558663
CXWL01083468
[CXWL] groundwater metagenome; biofilm material
1444
1368
-
Pro
GGG
[ENA]
¢þ
>WENV170559322
CXWL01119147
[CXWL] groundwater metagenome; biofilm material
2516
2440
-
Pro
GGG
[ENA]
¢þ
>WENV170559805
CXWL01152561
[CXWL] groundwater metagenome; biofilm material
2163
2239
+
Pro
GGG
[ENA]
¢þ
>WENV170625877
FUWD013208116
[FUWD] metagenome; unknown
1730
1654
-
Pro
GGG
[ENA]
¢þ
>WENV170634094
FUWD013409749
[FUWD] metagenome; unknown
1730
1654
-
Pro
GGG
[ENA]
¢þ
>WENV170639724
JFJP01006296
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
7676
7600
-
Pro
GGG
[ENA]
¢þ
>WENV170639764
JFJP01007185
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1102
1178
+
Pro
GGG
[ENA]
¢þ
>WENV170639840
JFJP01009661
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
676
600
-
Pro
GGG
[ENA]
¢þ
>WENV170705764
LNAP01000234
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
62388
62312
-
Pro
GGG
[ENA]
¢þ
>WENV170706988
LNAP01010436
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
11592
11668
+
Pro
GGG
[ENA]
¢þ
>WENV170707226
LNAP01015577
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5245
5169
-
Pro
GGG
[ENA]
¢þ
>WENV170708080
LNAP01048769
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1380
1456
+
Pro
GGG
[ENA]
¢þ
>WENV170708539
LNAP01093534
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
690
614
-
Pro
GGG
[ENA]
¢þ
>WENV170711909
LNFM01008264
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14716
14792
+
Pro
GGG
[ENA]
¢þ
>WENV170714050
LNFM01052086
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2760
2684
-
Pro
GGG
[ENA]
¢þ
>WENV170714949
LNFM01118579
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11
87
+
Pro
GGG
[ENA]
¢þ
>WENV170961924
MLJW01007314
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
695
771
+
Pro
GGG
[ENA]
¢þ
>WENV171003300
NNBT01003776
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1921
1845
-
Pro
GGG
[ENA]
¢þ
>WENV171003628
NNBU01001050
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
1546
1470
-
Pro
GGG
[ENA]
¢þ
>WENV171003778
NNBV01000750
[NNBV] plant metagenome; symbiotic tissue sample KVS11
10275
10199
-
Pro
GGG
[ENA]
¢þ
>C181078492
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4811559
4811483
-
Pro
GGG
-
¡û
>C181159406
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
1810700
1810624
-
Pro
GGG
-
¡û
>C191073182
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
4177541
4177465
-
Pro
GGG
-
¡û
>W09101608
AAFQ02000003
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
402763
402687
-
Pro
GGG
[ENA]
¡û
>W141558064
JHVQ01000003
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
428652
428728
+
Pro
GGG
[ENA]
¡û
>W09104869
AANM01000013
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
55804
55728
-
Pro
GGG
[ENA]
¡û
>W141561770
JHYS01000009
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
42222
42298
+
Pro
GGG
[ENA]
¡û
>W141565103
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
1252085
1252161
+
Pro
GGG
[ENA]
¡û
>W09119911
ACEE01000002
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
161706
161630
-
Pro
GGG
[ENA]
¡û
>W141695457
JMDZ01000002
Betaproteobacteria
Polaromonas glacialis [JMDZ]
254670
254746
+
Pro
GGG
[ENA]
¡û
>W141816817
JQKD01000056
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
11536
11460
-
Pro
GGG
[ENA]
¡û
>C141002545
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2098752
2098828
+
Pro
GGG
[Ensembl]
¡û
>W1910699861
MERY01000392
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_63_9 [MERY]
1358
1434
+
Pro
GGG
[ENA]
¡û
>W1910699870
MERZ01000038
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
1214
1138
-
Pro
GGG
[ENA]
¡û
>W1910700232
MESI01000032
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
4812
4888
+
Pro
GGG
[ENA]
¡û
>W1910700383
MESL01000044
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 [MESL]
49062
48986
-
Pro
GGG
[ENA]
¡û
>W1910726035
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
358305
358229
-
Pro
GGG
[ENA]
¡û
>W1910744113
MHZY01000187
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
19391
19315
-
Pro
GGG
[ENA]
¡û
>W1910792811
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
30039
30115
+
Pro
GGG
[ENA]
¡û
>C09111094
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2010292
2010368
+
Pro
GGG
[Ensembl]
¡û
>W1910859496
NBZV01000004
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
145415
145339
-
Pro
GGG
[ENA]
¡û
>W1910859546
NBZW01000015
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
84113
84037
-
Pro
GGG
[ENA]
¡û
>W1910888817
NESD01000001
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
825139
825215
+
Pro
GGG
[ENA]
¡û
>W1910889040
NESI01000011
Betaproteobacteria
Limnohabitans sp. B9-3 [NESI]
25740
25664
-
Pro
GGG
[ENA]
¡û
>W1910889278
NESO01000003
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
37052
36976
-
Pro
GGG
[ENA]
¡û
>W1910889307
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
2429690
2429766
+
Pro
GGG
[ENA]
¡û
>W1911139408
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
675660
675736
+
Pro
GGG
[ENA]
¡û
>W1911496709
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4829062
4828986
-
Pro
GGG
[ENA]
¡û
>W1911647340
QAJK01000055
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
24242
24318
+
Pro
GGG
[ENA]
¡û
>W1911709217
QPIB01000008
Betaproteobacteria
Xenophilus sp. E41 [QPIB]
357740
357664
-
Pro
GGG
[ENA]
¡û
>W1911775315
QXMN01000015
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
44367
44443
+
Pro
GGG
[ENA]
¡û
>W1911775415
QXNC01000017
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
42366
42442
+
Pro
GGG
[ENA]
¡û
>W1810046167
NNBQ01000002
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
602650
602726
+
Pro
GGG
[ENA]
¡û
>W1810046264
NNBR01000002
Betaproteobacteria
Variovorax sp. B2 [NNBR]
602662
602738
+
Pro
GGG
[ENA]
¡û
>W1810072253
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
1041696
1041620
-
Pro
GGG
[ENA]
¡û
>W1810192709
PKMT01000001
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
1865108
1865184
+
Pro
GGG
[ENA]
¡û
>SRA1003535
SRR002327.6310
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
215
139
-
Pro
GGG
[SRA]
>SRA1003685
SRR002327.120926
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
89
165
+
Pro
GGG
[SRA]
>SRA1003869
SRR002327.248035
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
142
218
+
Pro
GGG
[SRA]
>W1810305834
PTQX01000002
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
710023
709947
-
Pro
GGG
[ENA]
¡û
>W1810305866
PTQX01000012
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
9183
9259
+
Pro
GGG
[ENA]
¡û
>W1810305909
PTQY01000002
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
390304
390380
+
Pro
GGG
[ENA]
¡û
>W1810392044
PXZZ01000018
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
77536
77612
+
Pro
GGG
[ENA]
¡û
>W1810486664
QAYA01000005
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
409416
409492
+
Pro
GGG
[ENA]
¡û
>W1810570295
QEII01000234
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
62888
62812
-
Pro
GGG
[ENA]
¡û
>W1810577498
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
34927
35003
+
Pro
GGG
[ENA]
¡û
>W1810577602
QEOJ01000002
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
209006
208930
-
Pro
GGG
[ENA]
¡û
>W1810594314
QFZK01000001
Betaproteobacteria
Rhodoferax lacus IMCC26218 [QFZK]
507020
506944
-
Pro
GGG
[ENA]
¡û
>W1810672548
QJTM01000009
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
275466
275542
+
Pro
GGG
[ENA]
¡û
>W1810676116
QKLT01000010
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
275466
275542
+
Pro
GGG
[ENA]
¡û
>W1810682469
QKUE01000003
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
794198
794274
+
Pro
GGG
[ENA]
¡û
>W1810759441
QPJK01000007
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
407846
407770
-
Pro
GGG
[ENA]
¡û
>W1810763082
QQAV01000002
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
540112
540188
+
Pro
GGG
[ENA]
¡û
>SRA1014821
SRR023845.327274
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
127
203
+
Pro
GGG
[SRA]
>SRA1015412
SRR023846.49370
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
19
95
+
Pro
GGG
[SRA]
>SRA1016098
SRR023846.348132
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
251
175
-
Pro
GGG
[SRA]
>W1511352951
JROV01000007
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
1950
2026
+
Pro
GGG
[ENA]
¡û
>C11123603
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
4252318
4252242
-
Pro
GGG
[Ensembl]
¡û
>W11137142
AEGR01000041
Betaproteobacteria
Hylemonella gracilis ATCC 19624 [AEGR]
14676
14600
-
Pro
GGG
[ENA]
¡û
>W1511508944
JXQQ01000089
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
35434
35510
+
Pro
GGG
[ENA]
¡û
>W1511554995
JZWI01000012
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
181557
181633
+
Pro
GGG
[ENA]
¡û
>C161073170
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
3568397
3568473
+
Pro
GGG
[Ensembl]
¡û
>W121084925
AKIV01000076
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
114177
114253
+
Pro
GGG
[ENA]
¡û
>W121084966
AKIW01000037
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
21471
21547
+
Pro
GGG
[ENA]
¡û
>W1610047733
BBDP01000042
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
8591
8515
-
Pro
GGG
[ENA]
¡û
>W1610072152
BCUS01000024
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
35478
35402
-
Pro
GGG
[ENA]
¡û
>W1610072196
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
686242
686166
-
Pro
GGG
[ENA]
¡û
>W1610072264
BCUU01000068
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
6745
6669
-
Pro
GGG
[ENA]
¡û
>W1610074354
BCWP01000018
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
66452
66528
+
Pro
GGG
[ENA]
¡û
>W1610076195
BCYO01000003
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
330561
330637
+
Pro
GGG
[ENA]
¡û
>W1610591950
LDSL01000073
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
29554
29478
-
Pro
GGG
[ENA]
¡û
>W1610671412
LKCX01000016
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
5168
5244
+
Pro
GGG
[ENA]
¡û
>WENV074452
AACY023975717
Marine microbial communities from Global Ocean Sampling (GOS)
204
126
-
Pro
GGG
[ENA]
>W1610685623
LKTU01000064
Betaproteobacteria
Variovorax paradoxus [LKTU]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1610685673
LKTV01000141
Betaproteobacteria
Variovorax paradoxus [LKTV]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1610685715
LKTW01000118
Betaproteobacteria
Variovorax paradoxus [LKTW]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1610685766
LKTX01000107
Betaproteobacteria
Variovorax paradoxus [LKTX]
20717
20641
-
Pro
GGG
[ENA]
¡û
>W1610685824
LKTY01000144
Betaproteobacteria
Variovorax paradoxus [LKTY]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1610685872
LKTZ01000145
Betaproteobacteria
Variovorax paradoxus [LKTZ]
19219
19143
-
Pro
GGG
[ENA]
¡û
>W1610722494
LMCQ01000021
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
148913
148837
-
Pro
GGG
[ENA]
¡û
>W1610724090
LMDW01000001
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
1168003
1168079
+
Pro
GGG
[ENA]
¡û
>W1610724844
LMEK01000024
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
76255
76179
-
Pro
GGG
[ENA]
¡û
>W1610725429
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
789625
789701
+
Pro
GGG
[ENA]
¡û
>W1610735751
LMMT01000011
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
54303
54227
-
Pro
GGG
[ENA]
¡û
>W1610735848
LMMV01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
723984
724060
+
Pro
GGG
[ENA]
¡û
>W1610736106
LMNA01000029
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
314308
314384
+
Pro
GGG
[ENA]
¡û
>W1610744241
LMTS01000041
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
3149
3073
-
Pro
GGG
[ENA]
¡û
>W1610913484
LSJH01000330
Betaproteobacteria
Xylophilus ampelinus [LSJH]
30743
30819
+
Pro
GGG
[ENA]
¡û
>W1610954356
LVHG01000027
Betaproteobacteria
Variovorax paradoxus [LVHG]
206392
206468
+
Pro
GGG
[ENA]
¡û
>W1710044243
BBDP01000042
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
8591
8515
-
Pro
GGG
[ENA]
¡û
>W1710069354
BCUS01000024
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
35478
35402
-
Pro
GGG
[ENA]
¡û
>W1710069398
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
686242
686166
-
Pro
GGG
[ENA]
¡û
>W1710069466
BCUU01000068
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
6745
6669
-
Pro
GGG
[ENA]
¡û
>W1710071472
BCWP01000018
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
66452
66528
+
Pro
GGG
[ENA]
¡û
>W1710074010
BCYO01000003
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
330561
330637
+
Pro
GGG
[ENA]
¡û
>W1710506213
FMUJ01000009
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
78493
78569
+
Pro
GGG
[ENA]
¡û
>W1710512967
FMZU01000020
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
2040
1964
-
Pro
GGG
[ENA]
¡û
>W1710517928
FNDR01000001
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
398191
398115
-
Pro
GGG
[ENA]
¡û
>W1710523396
FNHX01000002
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
175293
175217
-
Pro
GGG
[ENA]
¡û
>W1710524820
FNJA01000004
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
261692
261616
-
Pro
GGG
[ENA]
¡û
>W1710530019
FNOL01000003
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
423423
423347
-
Pro
GGG
[ENA]
¡û
>W1710531370
FNPM01000006
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
29869
29945
+
Pro
GGG
[ENA]
¡û
>W1710534023
FNRO01000002
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
667662
667738
+
Pro
GGG
[ENA]
¡û
>W1710538150
FNUI01000009
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
333515
333439
-
Pro
GGG
[ENA]
¡û
>W1710539568
FNVM01000009
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
27049
27125
+
Pro
GGG
[ENA]
¡û
>W1710542705
FNZJ01000002
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
53871
53795
-
Pro
GGG
[ENA]
¡û
>W1710545301
FOBJ01000008
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
306968
306892
-
Pro
GGG
[ENA]
¡û
>W1710551528
FOGD01000002
Betaproteobacteria
Giesbergeria anulus [FOGD]
326810
326886
+
Pro
GGG
[ENA]
¡û
>W1710554313
FOII01000023
Betaproteobacteria
Variovorax sp. OV084 [FOII]
37348
37272
-
Pro
GGG
[ENA]
¡û
>W1710557153
FOKS01000009
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
27041
27117
+
Pro
GGG
[ENA]
¡û
>W1710557398
FOKZ01000014
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
9268
9344
+
Pro
GGG
[ENA]
¡û
>W1710558144
FOLP01000002
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
53871
53795
-
Pro
GGG
[ENA]
¡û
>W1710562260
FOOV01000006
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
27050
27126
+
Pro
GGG
[ENA]
¡û
>W1710569244
FOUG01000001
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
378908
378984
+
Pro
GGG
[ENA]
¡û
>W1710571866
FOWG01000003
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
330700
330624
-
Pro
GGG
[ENA]
¡û
>W1710572125
FOWL01000005
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
448896
448972
+
Pro
GGG
[ENA]
¡û
>W1710573272
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
593559
593635
+
Pro
GGG
[ENA]
¡û
>W1710578298
FPBM01000002
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
580776
580700
-
Pro
GGG
[ENA]
¡û
>W1710597089
FTMY01000007
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
110607
110531
-
Pro
GGG
[ENA]
¡û
>W1710711230
LDSL01000073
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
29554
29478
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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