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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273484 (120 seq.)
>W1710808918
LKDZ01000015
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
18290
18366
+
Gln
TTG
[ENA]
¡û
>W1710821648
LKTU01000034
Betaproteobacteria
Variovorax paradoxus [LKTU]
3889
3813
-
Gln
TTG
[ENA]
¡û
>W1710821691
LKTV01000039
Betaproteobacteria
Variovorax paradoxus [LKTV]
3889
3813
-
Gln
TTG
[ENA]
¡û
>W1710821748
LKTW01000112
Betaproteobacteria
Variovorax paradoxus [LKTW]
28444
28520
+
Gln
TTG
[ENA]
¡û
>W1710821792
LKTX01000028
Betaproteobacteria
Variovorax paradoxus [LKTX]
4812
4736
-
Gln
TTG
[ENA]
¡û
>W1710821848
LKTY01000065
Betaproteobacteria
Variovorax paradoxus [LKTY]
3889
3813
-
Gln
TTG
[ENA]
¡û
>W1710821903
LKTZ01000093
Betaproteobacteria
Variovorax paradoxus [LKTZ]
3855
3779
-
Gln
TTG
[ENA]
¡û
>W1710861756
LMDW01000004
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
4014
3938
-
Gln
TTG
[ENA]
¡û
>W1710862488
LMEK01000022
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
65159
65235
+
Gln
TTG
[ENA]
¡û
>W1710882335
LMTS01000193
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
56155
56079
-
Gln
TTG
[ENA]
¡û
>W1711123828
LUJJ01000018
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
98497
98421
-
Gln
TTG
[ENA]
¡û
>W1711143368
LVHG01000063
Betaproteobacteria
Variovorax paradoxus [LVHG]
83953
84029
+
Gln
TTG
[ENA]
¡û
>W1711250084
LYMK01000015
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
110697
110773
+
Gln
TTG
[ENA]
¡û
>W1711259828
LYVO01000057
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
29286
29362
+
Gln
TTG
[ENA]
¡û
>W1711384851
MEDL01000126
Betaproteobacteria
Acidovorax sp. SCN 68-22 [MEDL]
2550
2474
-
Gln
TTG
[ENA]
¡û
>W1711386508
MEFM01000024
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
4443
4367
-
Gln
TTG
[ENA]
¡û
>W1711387486
MEGR01000021
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
4443
4367
-
Gln
TTG
[ENA]
¡û
>W1711506615
MKWO01000019
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
130833
130909
+
Gln
TTG
[ENA]
¡û
>W131174621
ARIP01000046
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
85228
85152
-
Gln
TTG
[ENA]
¡û
>W131180335
ARNA01000040
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
4031
3955
-
Gln
TTG
[ENA]
¡û
>WENV180027034
FTIV01107180
[FTIV] metagenome; soil
47
123
+
Gln
TTG
[ENA]
¢þ
>WENV180099392
NMRC01001370
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
992
1068
+
Gln
TTG
[ENA]
¢þ
>WENV180693335
OCZS011163355
[OCZS] soil metagenome; soil
151
75
-
Gln
TTG
[ENA]
¢þ
>WENV181361177
OFNH01004589
[OFNH] sediment metagenome; Lake sediment
331
407
+
Gln
TTG
[ENA]
¢þ
>WENV181363123
OFOS01000039
[OFOS] sediment metagenome; Lake sediment
4864
4788
-
Gln
TTG
[ENA]
¢þ
>WENV181364485
OFOW01000045
[OFOW] sediment metagenome; Lake sediment
6365
6441
+
Gln
TTG
[ENA]
¢þ
>WENV181364550
OFOY01000027
[OFOY] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181364600
OFOZ01000125
[OFOZ] sediment metagenome; Lake sediment
8558
8482
-
Gln
TTG
[ENA]
¢þ
>WENV181364661
OFPA01000045
[OFPA] sediment metagenome; Lake sediment
29704
29780
+
Gln
TTG
[ENA]
¢þ
>WENV181364715
OFPB01000033
[OFPB] sediment metagenome; Lake sediment
29704
29780
+
Gln
TTG
[ENA]
¢þ
>WENV181364796
OFPD01000284
[OFPD] sediment metagenome; Lake sediment
1770
1694
-
Gln
TTG
[ENA]
¢þ
>WENV181364836
OFPE01001123
[OFPE] sediment metagenome; Lake sediment
894
970
+
Gln
TTG
[ENA]
¢þ
>WENV181365003
OFPH01000156
[OFPH] sediment metagenome; Lake sediment
3113
3189
+
Gln
TTG
[ENA]
¢þ
>WENV181365055
OFPI01000065
[OFPI] sediment metagenome; Lake sediment
5043
4967
-
Gln
TTG
[ENA]
¢þ
>WENV181365102
OFPJ01000108
[OFPJ] sediment metagenome; Lake sediment
1022
1098
+
Gln
TTG
[ENA]
¢þ
>WENV181365152
OFPK01000037
[OFPK] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181365195
OFPL01000045
[OFPL] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181365297
OFPN01000051
[OFPN] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181365307
OFPO01000007
[OFPO] sediment metagenome; Lake sediment
15756
15680
-
Gln
TTG
[ENA]
¢þ
>WENV181365376
OFPP01001008
[OFPP] sediment metagenome; Lake sediment
276
352
+
Gln
TTG
[ENA]
¢þ
>WENV181365406
OFPQ01000532
[OFPQ] sediment metagenome; Lake sediment
1054
1130
+
Gln
TTG
[ENA]
¢þ
>W141170121
AXXB01000011
Betaproteobacteria
Variovorax sp. JGI 0001016-C20 [AXXB]
12622
12546
-
Gln
TTG
[ENA]
¡û
>WENV183735125
PJUA01001167
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4819
4895
+
Gln
TTG
[ENA]
¢þ
>WENV183735667
PJUB01000385
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
15405
15481
+
Gln
TTG
[ENA]
¢þ
>WENV183736316
PJUC01000588
[PJUC] soil metagenome; Soil enriched on filter paper
7950
8026
+
Gln
TTG
[ENA]
¢þ
>WENV183741620
PJUG01000213
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
15851
15927
+
Gln
TTG
[ENA]
¢þ
>WENV183742111
PJUH01000315
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
15851
15927
+
Gln
TTG
[ENA]
¢þ
>WENV183744307
PJUK01006318
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
535
459
-
Gln
TTG
[ENA]
¢þ
>WENV170559543
CXWL01127800
[CXWL] groundwater metagenome; biofilm material
6428
6504
+
Gln
TTG
[ENA]
¢þ
>WENV170706795
LNAP01006792
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8341
8417
+
Gln
TTG
[ENA]
¢þ
>WENV171003306
NNBT01003987
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
302
226
-
Gln
TTG
[ENA]
¢þ
>WENV171003579
NNBU01000585
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2428
2504
+
Gln
TTG
[ENA]
¢þ
>WENV171003710
NNBV01000461
[NNBV] plant metagenome; symbiotic tissue sample KVS11
6227
6151
-
Gln
TTG
[ENA]
¢þ
>C181078475
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
5922758
5922834
+
Gln
TTG
-
¡û
>C181158562
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
780018
780094
+
Gln
TTG
-
¡û
>C181159392
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
5136121
5136045
-
Gln
TTG
-
¡û
>W141558074
JHVQ01000005
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
351311
351387
+
Gln
TTG
[ENA]
¡û
>W09119958
ACEE01000055
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
32659
32735
+
Gln
TTG
[ENA]
¡û
>C09111104
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
4591860
4591936
+
Gln
TTG
[Ensembl]
¡û
>C141002551
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
4764555
4764631
+
Gln
TTG
[Ensembl]
¡û
>W1910792835
MRCN01000012
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
25598
25522
-
Gln
TTG
[ENA]
¡û
>W1911496718
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
1515504
1515428
-
Gln
TTG
[ENA]
¡û
>W1911647348
QAJK01000065
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
89452
89528
+
Gln
TTG
[ENA]
¡û
>W1911770739
QXJC01000003
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
544802
544878
+
Gln
TTG
[ENA]
¡û
>W1911775318
QXMN01000023
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
103205
103281
+
Gln
TTG
[ENA]
¡û
>W1810046180
NNBQ01000003
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
80687
80763
+
Gln
TTG
[ENA]
¡û
>W1810046283
NNBR01000004
Betaproteobacteria
Variovorax sp. B2 [NNBR]
80688
80764
+
Gln
TTG
[ENA]
¡û
>W1810072213
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
2139998
2140074
+
Gln
TTG
[ENA]
¡û
>W1810192714
PKMT01000001
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
615202
615126
-
Gln
TTG
[ENA]
¡û
>W1810392048
PXZZ01000024
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
27925
28001
+
Gln
TTG
[ENA]
¡û
>W1810486688
QAYA01000026
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
4152
4076
-
Gln
TTG
[ENA]
¡û
>W1810573116
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
81776
81700
-
Gln
TTG
[ENA]
¡û
>W1810577523
QEOH01000004
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
222889
222965
+
Gln
TTG
[ENA]
¡û
>W1810672559
QJTM01000024
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
4152
4076
-
Gln
TTG
[ENA]
¡û
>W1810676127
QKLT01000027
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
4152
4076
-
Gln
TTG
[ENA]
¡û
>W1810682492
QKUE01000024
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
46654
46730
+
Gln
TTG
[ENA]
¡û
>W1810884779
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
426031
425955
-
Gln
TTG
[ENA]
¡û
>SRA1015232
SRR023845.510772
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
180
104
-
Gln
TTG
[SRA]
>SRA1015975
SRR023846.291949
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
21
97
+
Gln
TTG
[SRA]
>W1511352986
JROV01001521
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
612
688
+
Gln
TTG
[ENA]
¡û
>C11123583
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
5443353
5443429
+
Gln
TTG
[Ensembl]
¡û
>W1511508954
JXQQ01000136
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
25423
25499
+
Gln
TTG
[ENA]
¡û
>W1511555007
JZWI01000021
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
48937
49013
+
Gln
TTG
[ENA]
¡û
>W121084969
AKIW01000064
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
27660
27736
+
Gln
TTG
[ENA]
¡û
>W1610047755
BBDP01000486
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
726
802
+
Gln
TTG
[ENA]
¡û
>W1610072166
BCUS01000051
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
3182
3106
-
Gln
TTG
[ENA]
¡û
>W1610072219
BCUT01000005
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
263319
263243
-
Gln
TTG
[ENA]
¡û
>W1610072238
BCUU01000003
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
107694
107770
+
Gln
TTG
[ENA]
¡û
>W1610685610
LKTU01000034
Betaproteobacteria
Variovorax paradoxus [LKTU]
3889
3813
-
Gln
TTG
[ENA]
¡û
>W1610685653
LKTV01000039
Betaproteobacteria
Variovorax paradoxus [LKTV]
3889
3813
-
Gln
TTG
[ENA]
¡û
>W1610685710
LKTW01000112
Betaproteobacteria
Variovorax paradoxus [LKTW]
28444
28520
+
Gln
TTG
[ENA]
¡û
>W1610685754
LKTX01000028
Betaproteobacteria
Variovorax paradoxus [LKTX]
4812
4736
-
Gln
TTG
[ENA]
¡û
>W1610685810
LKTY01000065
Betaproteobacteria
Variovorax paradoxus [LKTY]
3889
3813
-
Gln
TTG
[ENA]
¡û
>W1610685865
LKTZ01000093
Betaproteobacteria
Variovorax paradoxus [LKTZ]
3855
3779
-
Gln
TTG
[ENA]
¡û
>W1610724102
LMDW01000004
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
4014
3938
-
Gln
TTG
[ENA]
¡û
>W1610724834
LMEK01000022
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
65159
65235
+
Gln
TTG
[ENA]
¡û
>W1610744261
LMTS01000193
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
56155
56079
-
Gln
TTG
[ENA]
¡û
>W1610954376
LVHG01000063
Betaproteobacteria
Variovorax paradoxus [LVHG]
83953
84029
+
Gln
TTG
[ENA]
¡û
>W1710044265
BBDP01000486
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
726
802
+
Gln
TTG
[ENA]
¡û
>W1710069368
BCUS01000051
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
3182
3106
-
Gln
TTG
[ENA]
¡û
>W1710069421
BCUT01000005
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
263319
263243
-
Gln
TTG
[ENA]
¡û
>W1710069440
BCUU01000003
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
107694
107770
+
Gln
TTG
[ENA]
¡û
>W1710506217
FMUJ01000012
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
12232
12308
+
Gln
TTG
[ENA]
¡û
>W1710512951
FMZU01000015
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
151664
151740
+
Gln
TTG
[ENA]
¡û
>W1710517935
FNDR01000004
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
146245
146321
+
Gln
TTG
[ENA]
¡û
>W1710530054
FNOL01000035
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
45794
45870
+
Gln
TTG
[ENA]
¡û
>W1710531388
FNPM01000017
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
6558
6482
-
Gln
TTG
[ENA]
¡û
>W1710534033
FNRO01000003
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
594363
594287
-
Gln
TTG
[ENA]
¡û
>W1710538181
FNUI01000031
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
27928
28004
+
Gln
TTG
[ENA]
¡û
>W1710539592
FNVM01000033
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
3757
3681
-
Gln
TTG
[ENA]
¡û
>W1710542728
FNZJ01000013
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
197127
197203
+
Gln
TTG
[ENA]
¡û
>W1710545326
FOBJ01000027
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
3853
3777
-
Gln
TTG
[ENA]
¡û
>W1710554318
FOII01000025
Betaproteobacteria
Variovorax sp. OV084 [FOII]
4019
3943
-
Gln
TTG
[ENA]
¡û
>W1710557173
FOKS01000033
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
28117
28193
+
Gln
TTG
[ENA]
¡û
>W1710558169
FOLP01000013
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
197127
197203
+
Gln
TTG
[ENA]
¡û
>W1710562289
FOOV01000045
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
28113
28189
+
Gln
TTG
[ENA]
¡û
>W1710569268
FOUG01000010
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
180777
180853
+
Gln
TTG
[ENA]
¡û
>W1710571844
FOWG01000001
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
1207405
1207481
+
Gln
TTG
[ENA]
¡û
>W1710572141
FOWL01000016
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
123923
123847
-
Gln
TTG
[ENA]
¡û
>W1710573302
FOXJ01000004
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
173558
173482
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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