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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273540 (71 seq.)
>W1710803030
LJYG01000105
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
18946
19022
+
Arg
CCG
[ENA]
¡û
>W1710858040
LMAR01000064
Alphaproteobacteria
Bosea thiooxidans [LMAR]
15261
15185
-
Arg
CCG
[ENA]
¡û
>W1710869483
LMJT01000013
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
5378
5302
-
Arg
CCG
[ENA]
¡û
>W1710869531
LMJU01000016
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
475774
475850
+
Arg
CCG
[ENA]
¡û
>W1710869643
LMJW01000020
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
17142
17066
-
Arg
CCG
[ENA]
¡û
>W1710879503
LMRT01000001
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
616144
616220
+
Arg
CCG
[ENA]
¡û
>W1711072954
LSIB01000142
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
1319
1243
-
Arg
CCG
[ENA]
¡û
>W1711073134
LSIG01000119
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
49798
49722
-
Arg
CCG
[ENA]
¡û
>W1711073321
LSIK01000400
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
10100
10176
+
Arg
CCG
[ENA]
¡û
>W1711073806
LSIY01000049
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
4835
4759
-
Arg
CCG
[ENA]
¡û
>W1711074345
LSJL01000053
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
19842
19918
+
Arg
CCG
[ENA]
¡û
>W1711074520
LSJP01000391
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
4876
4800
-
Arg
CCG
[ENA]
¡û
>W1711074608
LSJR01000283
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
4876
4800
-
Arg
CCG
[ENA]
¡û
>W1711074713
LSJU01000343
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4876
4800
-
Arg
CCG
[ENA]
¡û
>W1711074769
LSJV01000120
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
5693
5617
-
Arg
CCG
[ENA]
¡û
>W1711074847
LSJX01000080
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
4962
4886
-
Arg
CCG
[ENA]
¡û
>W1711075569
LSKN01000139
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
4835
4759
-
Arg
CCG
[ENA]
¡û
>W1711502407
MKSQ01000026
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
338486
338410
-
Arg
CCG
[ENA]
¡û
>C171049993
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
874153
874077
-
Arg
CCG
-
¡û
>WENV181415314
OGCL01007780
[OGCL] hot springs metagenome; Hot spring water
1390
1314
-
Arg
CCG
[ENA]
¢þ
>WENV181415509
OGCL01012750
[OGCL] hot springs metagenome; Hot spring water
804
880
+
Arg
CCG
[ENA]
¢þ
>WENV170680955
LFEF01038172
[LFEF] freshwater metagenome; waterbloom
7115
7039
-
Arg
CCG
[ENA]
¢þ
>WENV170713408
LNFM01030518
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
106
182
+
Arg
CCG
[ENA]
¢þ
>C181063225
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
1001518
1001442
-
Arg
CCG
-
¡û
>C191014024
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
5114381
5114305
-
Arg
CCG
-
¡û
>C191071676
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
7429743
7429819
+
Arg
CCG
-
¡û
>W141805298
JPKG01000029
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
142124
142200
+
Arg
CCG
[ENA]
¡û
>W141815805
JQJJ01000010
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
508849
508925
+
Arg
CCG
[ENA]
¡û
>W1910501731
FYAS01000030
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
167002
166926
-
Arg
CCG
[ENA]
¡û
>W1910635408
LNCQ01000023
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
739827
739903
+
Arg
CCG
[ENA]
¡û
>W1910840125
MZXT01000009
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
570126
570050
-
Arg
CCG
[ENA]
¡û
>W1910840163
MZXU01000005
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
570126
570050
-
Arg
CCG
[ENA]
¡û
>W1910847662
NBDP01000019
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
533382
533306
-
Arg
CCG
[ENA]
¡û
>W1911148445
NPEW01000026
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
29576
29500
-
Arg
CCG
[ENA]
¡û
>W1911148507
NPEX01000086
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
5159
5083
-
Arg
CCG
[ENA]
¡û
>W1810252026
PQFZ01000021
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
50308
50232
-
Arg
CCG
[ENA]
¡û
>W1810463347
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
1364927
1365003
+
Arg
CCG
[ENA]
¡û
>W1810676917
QKMI01000014
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
159411
159487
+
Arg
CCG
[ENA]
¡û
>W1810783287
QQTO01000001
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
373972
374048
+
Arg
CCG
[ENA]
¡û
>W1810783341
QQTP01000003
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
374119
374195
+
Arg
CCG
[ENA]
¡û
>W1511353026
JROW01000251
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
16254
16178
-
Arg
CCG
[ENA]
¡û
>C161070688
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
4402203
4402127
-
Arg
CCG
[Ensembl]
¡û
>W121103242
AKZI01000187
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
1775
1851
+
Arg
CCG
[ENA]
¡û
>W1610550623
JXTJ01000007
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
69239
69163
-
Arg
CCG
[ENA]
¡û
>W1610666887
LJYG01000105
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
18946
19022
+
Arg
CCG
[ENA]
¡û
>W1610720386
LMAR01000064
Alphaproteobacteria
Bosea thiooxidans [LMAR]
15261
15185
-
Arg
CCG
[ENA]
¡û
>W1610731829
LMJT01000013
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
5378
5302
-
Arg
CCG
[ENA]
¡û
>W1610731877
LMJU01000016
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
475774
475850
+
Arg
CCG
[ENA]
¡û
>W1610731989
LMJW01000020
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
17142
17066
-
Arg
CCG
[ENA]
¡û
>W1610741849
LMRT01000001
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
616144
616220
+
Arg
CCG
[ENA]
¡û
>W1610912214
LSIB01000142
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
1319
1243
-
Arg
CCG
[ENA]
¡û
>W1610912439
LSIG01000119
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
49798
49722
-
Arg
CCG
[ENA]
¡û
>W1610912626
LSIK01000400
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
10100
10176
+
Arg
CCG
[ENA]
¡û
>W1610913111
LSIY01000049
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
4835
4759
-
Arg
CCG
[ENA]
¡û
>W1610913650
LSJL01000053
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
19842
19918
+
Arg
CCG
[ENA]
¡û
>W1610913825
LSJP01000391
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
4876
4800
-
Arg
CCG
[ENA]
¡û
>W1610913913
LSJR01000283
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
4876
4800
-
Arg
CCG
[ENA]
¡û
>W1610914018
LSJU01000343
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4876
4800
-
Arg
CCG
[ENA]
¡û
>W1610914074
LSJV01000120
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
5693
5617
-
Arg
CCG
[ENA]
¡û
>W1610914152
LSJX01000080
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
4962
4886
-
Arg
CCG
[ENA]
¡û
>W1610914874
LSKN01000139
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
4835
4759
-
Arg
CCG
[ENA]
¡û
>W1710064167
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
1800621
1800697
+
Arg
CCG
[ENA]
¡û
>W1710515701
FNBZ01000005
Alphaproteobacteria
Bosea robiniae [FNBZ]
446161
446237
+
Arg
CCG
[ENA]
¡û
>W1710538976
FNUY01000018
Alphaproteobacteria
Bosea lathyri [FNUY]
2605
2529
-
Arg
CCG
[ENA]
¡û
>W1710544031
FOAN01000006
Alphaproteobacteria
Bosea lupini [FOAN]
266811
266887
+
Arg
CCG
[ENA]
¡û
>W1710556980
FOKP01000003
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
403537
403613
+
Arg
CCG
[ENA]
¡û
>W1710564940
FOQV01000017
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
35861
35937
+
Arg
CCG
[ENA]
¡û
>W1710571275
FOVU01000001
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
901992
902068
+
Arg
CCG
[ENA]
¡û
>W1710596448
FTMO01000006
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
26604
26528
-
Arg
CCG
[ENA]
¡û
>W1710603288
FUYX01000006
Alphaproteobacteria
Bosea thiooxidans [FUYX]
108137
108061
-
Arg
CCG
[ENA]
¡û
>W1710660458
JXTJ01000007
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
69239
69163
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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