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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273574 (72 seq.)
>W1710860350
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1053128
1053054
-
Ile
GAT
[ENA]
¡û
>W1710860474
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
593423
593497
+
Ile
GAT
[ENA]
¡û
>W1710862338
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
263919
263993
+
Ile
GAT
[ENA]
¡û
>W1710864326
LMFU01000001
Actinomycetota
Agromyces sp. Root1464 [LMFU]
1112416
1112342
-
Ile
GAT
[ENA]
¡û
>W1710865464
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
263888
263962
+
Ile
GAT
[ENA]
¡û
>W1710867798
LMIO01000004
Actinomycetota
Leifsonia sp. Root227 [LMIO]
210724
210648
-
Ile
GAT
[ENA]
¡û
>W1710867929
LMIR01000002
Actinomycetota
Agromyces sp. Root81 [LMIR]
1447983
1448057
+
Ile
GAT
[ENA]
¡û
>W1710870573
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
169589
169663
+
Ile
GAT
[ENA]
¡û
>W1710873330
LMMR01000008
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
85269
85195
-
Ile
GAT
[ENA]
¡û
>W1710875489
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
920162
920088
-
Ile
GAT
[ENA]
¡û
>W1710876166
LMOZ01000003
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
572951
572875
-
Ile
GAT
[ENA]
¡û
>W1710879735
LMRW01000001
Actinomycetota
Agromyces sp. Soil535 [LMRW]
230797
230871
+
Ile
GAT
[ENA]
¡û
>W1710881107
LMSV01000001
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
989159
989085
-
Ile
GAT
[ENA]
¡û
>W1710893831
LNFD01000243
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
2803
2877
+
Ile
GAT
[ENA]
¡û
>W1710921189
LNZG01000048
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
77356
77432
+
Ile
GAT
[ENA]
¡û
>W1711386903
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
668838
668764
-
Ile
GAT
[ENA]
¡û
>W1711505278
MKVJ01000002
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
116319
116243
-
Ile
GAT
[ENA]
¡û
>W1711505558
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1261688
1261614
-
Ile
GAT
[ENA]
¡û
>W1711961730
NCSR01000001
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
182824
182900
+
Ile
GAT
[ENA]
¡û
>W131162239
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
107852
107928
+
Ile
GAT
[ENA]
¡û
>W131184635
ARTB01000002
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
1116830
1116754
-
Ile
GAT
[ENA]
¡û
>W131217911
ATXF01000005
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
673940
674014
+
Ile
GAT
[ENA]
¡û
>W131217959
ATXG01000003
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
245628
245554
-
Ile
GAT
[ENA]
¡û
>W131218489
ATXT01000020
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
77612
77538
-
Ile
GAT
[ENA]
¡û
>C012805
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
10986
11062
+
Ile
GAT
[Ensembl]
¡û
>WENV180017356
FSWU01000108
[FSWU] metagenome; soil
10572
10646
+
Ile
GAT
[ENA]
¢þ
>WENV180018351
FSYX01000204
[FSYX] metagenome; soil
2478
2552
+
Ile
GAT
[ENA]
¢þ
>WENV180025952
FTIR01000723
[FTIR] metagenome; soil
4154
4078
-
Ile
GAT
[ENA]
¢þ
>WENV180032999
FTKD01031291
[FTKD] metagenome; soil
436
510
+
Ile
GAT
[ENA]
¢þ
>W141146491
AWVQ01000043
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
9749
9673
-
Ile
GAT
[ENA]
¡û
>W141188422
AYMR01000034
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
35804
35728
-
Ile
GAT
[ENA]
¡û
>WENV183678811
ORJL011925474
[ORJL] groundwater metagenome; groundwater
183
257
+
Ile
GAT
[ENA]
¢þ
>WENV183697770
OUNK010079473
[OUNK] metagenome; soil
907
981
+
Ile
GAT
[ENA]
¢þ
>WENV170193541
CEPH01118792
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
348
422
+
Ile
GAT
[ENA]
¢þ
>WENV170712932
LNFM01020787
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
491
417
-
Ile
GAT
[ENA]
¢þ
>C181169609
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
10371
10445
+
Ile
GAT
-
¡û
>C191130399
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
10066
10142
+
Ile
GAT
-
¡û
>C191143847
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
838984
838910
-
Ile
GAT
-
¡û
>C191183356
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
381661
381587
-
Ile
GAT
-
¡û
>C141007879
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
10992
11068
+
Ile
GAT
[Ensembl]
¡û
>W1911497894
OCST01000005
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
94863
94938
+
Ile
GAT
[ENA]
¡û
>W1810392910
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
1665850
1665924
+
Ile
GAT
[ENA]
¡û
>W1810568980
QEFA01000001
Actinomycetota
Agromyces badenianii 845 [QEFA]
1067479
1067553
+
Ile
GAT
[ENA]
¡û
>W1810684446
QKXI01000003
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
243429
243353
-
Ile
GAT
[ENA]
¡û
>W1810860808
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
199658
199732
+
Ile
GAT
[ENA]
¡û
>W1810886036
QUNT01000002
Actinomycetota
Agromyces sp. OV568 [QUNT]
812427
812353
-
Ile
GAT
[ENA]
¡û
>SRA1014173
SRR023845.26717
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
242
168
-
Ile
GAT
[SRA]
>W1511691429
LFYU01000460
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
162
86
-
Ile
GAT
[ENA]
¡û
>C161063177
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
10163
10237
+
Ile
GAT
[Ensembl]
¡û
>C161076855
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
2302433
2302509
+
Ile
GAT
[Ensembl]
¡û
>W1610050183
BBFP01000039
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
989
913
-
Ile
GAT
[ENA]
¡û
>W1610050676
BBGC01000259
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
315
241
-
Ile
GAT
[ENA]
¡û
>W1610722696
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1053128
1053054
-
Ile
GAT
[ENA]
¡û
>W1610722820
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
593423
593497
+
Ile
GAT
[ENA]
¡û
>W1610724684
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
263919
263993
+
Ile
GAT
[ENA]
¡û
>W1610726672
LMFU01000001
Actinomycetota
Agromyces sp. Root1464 [LMFU]
1112416
1112342
-
Ile
GAT
[ENA]
¡û
>W1610727810
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
263888
263962
+
Ile
GAT
[ENA]
¡û
>W1610730144
LMIO01000004
Actinomycetota
Leifsonia sp. Root227 [LMIO]
210724
210648
-
Ile
GAT
[ENA]
¡û
>W1610730275
LMIR01000002
Actinomycetota
Agromyces sp. Root81 [LMIR]
1447983
1448057
+
Ile
GAT
[ENA]
¡û
>W1610732919
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
169589
169663
+
Ile
GAT
[ENA]
¡û
>W1610735676
LMMR01000008
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
85269
85195
-
Ile
GAT
[ENA]
¡û
>W1610737835
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
920162
920088
-
Ile
GAT
[ENA]
¡û
>W1610738512
LMOZ01000003
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
572951
572875
-
Ile
GAT
[ENA]
¡û
>W1610742081
LMRW01000001
Actinomycetota
Agromyces sp. Soil535 [LMRW]
230797
230871
+
Ile
GAT
[ENA]
¡û
>W1610743453
LMSV01000001
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
989159
989085
-
Ile
GAT
[ENA]
¡û
>W1610754097
LNFD01000243
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
2803
2877
+
Ile
GAT
[ENA]
¡û
>W1710046582
BBFP01000039
Actinomycetota
Agromyces ulmi JCM 13315 [BBFP]
989
913
-
Ile
GAT
[ENA]
¡û
>W1710047075
BBGC01000259
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
315
241
-
Ile
GAT
[ENA]
¡û
>W1710540783
FNXD01000001
Actinomycetota
Leifsonia sp. CL154 [FNXD]
492763
492687
-
Ile
GAT
[ENA]
¡û
>W1710568256
FOTM01000001
Actinomycetota
Leifsonia sp. CL147 [FOTM]
16133
16209
+
Ile
GAT
[ENA]
¡û
>W1710575369
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
224039
224113
+
Ile
GAT
[ENA]
¡û
>W1710594688
FSRJ01000003
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
152888
152962
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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