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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273589 (9 seq.)
>WENV180393028
OBPP01054400
[OBPP] marine metagenome; ENVO:00002042
169
246
+
Ile
GAT
[ENA]
¡û
>WENV180393831
OBPR01013471
[OBPR] marine metagenome; ENVO:00002042
449
372
-
Ile
GAT
[ENA]
¡û
>W141170885
AXZA01000019
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
36317
36240
-
Ile
GAT
[ENA]
¡û
>WENV170570422
FLOH01000004
[FLOH] marine metagenome; water
745792
745869
+
Ile
GAT
[ENA]
¡û
>WENV170600645
FUWD010136308
[FUWD] metagenome; unknown
894
971
+
Ile
GAT
[ENA]
¡û
>WENV170645473
JNSJ01000014
[JNSJ] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
896
819
-
Ile
GAT
[ENA]
¡û
>WENV058513
AACY023331643
Marine microbial communities from Global Ocean Sampling (GOS)
411
490
+
Ile
GAT
[ENA]
>W1610597569
LFFA01000018
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
57077
57000
-
Ile
GAT
[ENA]
¡û
>W1710718816
LFFA01000018
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
57077
57000
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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