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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273657 (60 seq.)
>W1710864190
LMFR01000012
Actinomycetota
Microbacterium sp. Root53 [LMFR]
182724
182648
-
Met
CAT
[ENA]
¡û
>W1710867789
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
352932
352856
-
Met
CAT
[ENA]
¡û
>W1710870089
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
91891
91815
-
Met
CAT
[ENA]
¡û
>W1710876161
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1078972
1078896
-
Met
CAT
[ENA]
¡û
>W1710876529
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
130239
130163
-
Met
CAT
[ENA]
¡û
>W1710878590
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
130369
130293
-
Met
CAT
[ENA]
¡û
>W1710893840
LNFD01000303
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
321
245
-
Met
CAT
[ENA]
¡û
>W1710921184
LNZG01000046
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
100859
100783
-
Met
CAT
[ENA]
¡û
>W1711505298
MKVJ01000018
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
183747
183671
-
Met
CAT
[ENA]
¡û
>W1711961753
NCSR01000010
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
53366
53290
-
Met
CAT
[ENA]
¡û
>W131162260
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
1634141
1634065
-
Met
CAT
[ENA]
¡û
>W131184619
ARTB01000001
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
654508
654584
+
Met
CAT
[ENA]
¡û
>C012838
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
956741
956665
-
Met
CAT
[Ensembl]
¡û
>C171065822
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
3401514
3401438
-
Met
CAT
-
¡û
>WENV180019340
FTBU01001462
[FTBU] metagenome; soil
1129
1053
-
fMet
CAT
[ENA]
¢þ
>WENV180025929
FTIR01000288
[FTIR] metagenome; soil
319
245
-
fMet
CAT
[ENA]
¢þ
>WENV180095538
MTBK01073281
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1966
1892
-
fMet
CAT
[ENA]
¢þ
>W141146504
AWVQ01000305
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
7414
7490
+
Met
CAT
[ENA]
¡û
>W141188408
AYMR01000009
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
242940
242864
-
Met
CAT
[ENA]
¡û
>W141256100
CBVQ010000218
Actinomycetota
Microbacterium sp. C448 [CBVQ]
27994
28070
+
Met
CAT
[ENA]
¡û
>WENV183727334
PJTO01029572
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
382
306
-
fMet
CAT
[ENA]
¢þ
>WENV183728372
PJTQ01000030
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
296859
296783
-
fMet
CAT
[ENA]
¢þ
>WENV183729476
PJTQ01047083
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
168
244
+
fMet
CAT
[ENA]
¢þ
>WENV183737103
PJUD01000464
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
6232
6156
-
fMet
CAT
[ENA]
¢þ
>WENV183740419
PJUF01001868
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
9372
9296
-
fMet
CAT
[ENA]
¢þ
>C181143969
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
682719
682795
+
Met
CAT
-
¡û
>C191130431
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
2611071
2610995
-
Met
CAT
-
¡û
>W141565040
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
564913
564837
-
Met
CAT
[ENA]
¡û
>W141750751
JNSC01000022
Actinomycetota
actinobacterium acMicro-1 [JNSC]
15627
15551
-
Met
CAT
[ENA]
¡û
>W141766570
JOEB01000002
Actinomycetota
Mycetocola saprophilus [JOEB]
303856
303780
-
Met
CAT
[ENA]
¡û
>W141766631
JOEC01000002
Actinomycetota
Mycetocola saprophilus [JOEC]
1138165
1138241
+
Met
CAT
[ENA]
¡û
>W141817503
JQKT01000007
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
715879
715803
-
Met
CAT
[ENA]
¡û
>W1910181917
BJML01000006
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
75668
75742
+
Met
CAT
[ENA]
¡û
>W1910832058
MYFP01000017
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
34891
34965
+
Met
CAT
[ENA]
¡û
>W1911075289
NMUM01000023
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
64880
64954
+
Met
CAT
[ENA]
¡û
>W1911075309
NMUN01000004
Actinomycetota
Microbacterium sp. BR1 [NMUN]
68351
68425
+
Met
CAT
[ENA]
¡û
>W1911140321
NOYP01000037
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
43363
43437
+
Met
CAT
[ENA]
¡û
>W1810234138
PPEE01000004
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
24698
24624
-
Met
CAT
[ENA]
¡û
>W1810248604
PQBR01000015
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
8800
8726
-
Met
CAT
[ENA]
¡û
>W1810475467
QAJB01000012
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
9775
9701
-
Met
CAT
[ENA]
¡û
>W1810538334
QDFT01000007
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
103445
103519
+
Met
CAT
[ENA]
¡û
>W1810568866
QEEX01000002
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
207353
207429
+
Met
CAT
[ENA]
¡û
>W1810684434
QKXI01000001
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
468664
468740
+
Met
CAT
[ENA]
¡û
>W1810787048
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
478115
478189
+
Met
CAT
[ENA]
¡û
>W1810861331
QTTU01000002
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
157811
157737
-
Met
CAT
[ENA]
¡û
>W1511691451
LFYU01002400
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
510
586
+
Met
CAT
[ENA]
¡û
>C161043632
CP012697
Actinomycetota
Microbacterium sp. No. 7 [CP012697]
1880987
1880911
-
Met
CAT
[Ensembl]
¡û
>W1610050687
BBGC01001261
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
301
377
+
Met
CAT
[ENA]
¡û
>W1610726536
LMFR01000012
Actinomycetota
Microbacterium sp. Root53 [LMFR]
182724
182648
-
Met
CAT
[ENA]
¡û
>W1610730135
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
352932
352856
-
Met
CAT
[ENA]
¡û
>W1610732435
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
91891
91815
-
Met
CAT
[ENA]
¡û
>W1610738507
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
1078972
1078896
-
Met
CAT
[ENA]
¡û
>W1610738875
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
130239
130163
-
Met
CAT
[ENA]
¡û
>W1610740936
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
130369
130293
-
Met
CAT
[ENA]
¡û
>W1610754106
LNFD01000303
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
321
245
-
Met
CAT
[ENA]
¡û
>W1710047086
BBGC01001261
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
301
377
+
Met
CAT
[ENA]
¡û
>W1710525436
FNJN01000008
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
61039
61115
+
Met
CAT
[ENA]
¡û
>W1710540790
FNXD01000003
Actinomycetota
Leifsonia sp. CL154 [FNXD]
213574
213498
-
Met
CAT
[ENA]
¡û
>W1710565118
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
715896
715820
-
Met
CAT
[ENA]
¡û
>W1710568264
FOTM01000003
Actinomycetota
Leifsonia sp. CL147 [FOTM]
213603
213527
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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