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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27368 (31 seq.)
>W1710861907
LMDZ01000005
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
959434
959345
-
Ser
CGA
[ENA]
¡û
>W1710862176
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1772646
1772735
+
Ser
CGA
[ENA]
¡û
>W1710866802
LMHT01000034
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
294612
294523
-
Ser
CGA
[ENA]
¡û
>W1710867698
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1694560
1694649
+
Ser
CGA
[ENA]
¡û
>W1711386085
MEEW01000139
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
15870
15959
+
Ser
CGA
[ENA]
¡û
>WENV180016401
FSUX01000023
[FSUX] metagenome; soil
2704
2615
-
Ser
CGA
[ENA]
¡û
>WENV180016408
FSUX01000269
[FSUX] metagenome; soil
2910
2821
-
Ser
CGA
[ENA]
¡û
>WENV180026480
FTIT01511564
[FTIT] metagenome; soil
9038
8949
-
Ser
CGA
[ENA]
¡û
>WENV180028181
FTJA01002083
[FTJA] metagenome; soil
2007
1918
-
Ser
CGA
[ENA]
¡û
>WENV180033080
FTKD01202310
[FTKD] metagenome; soil
161
72
-
Ser
CGA
[ENA]
¡û
>WENV181227891
OFDN01071338
[OFDN] hot springs metagenome; Water
761
672
-
Ser
CGA
[ENA]
¡û
>WENV170706751
LNAP01006103
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
629
540
-
Ser
CGA
[ENA]
¡û
>C181179032
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
2316595
2316684
+
Ser
CGA
-
¡û
>W141779081
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
137029
137118
+
Ser
CGA
[ENA]
¡û
>W1810725229
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
680144
680055
-
Ser
CGA
[ENA]
¡û
>W2010369892
CAHJWH010000043
Alphaproteobacteria
Caulobacter sp. S45 [CAHJWH]
19566
19477
-
Ser
CGA
[ENA]
¡û
>W2010567454
JAATJC010000001
Alphaproteobacteria
Sphingomonas kaistensis DSM 16846 [JAATJC]
85685
85596
-
Ser
CGA
[ENA]
¡û
>W2010724565
JACIDK010000007
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
1866
1955
+
Ser
CGA
[ENA]
¡û
>W2110569134
JAGSGD010000002
Alphaproteobacteria
Phenylobacterium sp. 20VBR1 [JAGSGD]
19906
19817
-
Ser
CGA
[ENA]
¡û
>W2110600962
JAHGAW010000001
Alphaproteobacteria
Sphingobium sp. H33 [JAHGAW]
481508
481419
-
Ser
CGA
[ENA]
¡û
>W2110610671
JAHKKS010000004
Alphaproteobacteria
Sphingobium xanthum NL9 [JAHKKS]
273584
273673
+
Ser
CGA
[ENA]
¡û
>C231381054
CP097253
Alphaproteobacteria
Sphingomonas glaciei S8-45 [CP097253]
1467713
1467624
-
Ser
CGA
-
¡û
>C231434435
CP101283
Alphaproteobacteria
Phenylobacterium sp. LH3H17 [CP101283]
509893
509982
+
Ser
CGA
-
¡û
>C231561328
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
4145763
4145674
-
Ser
CGA
-
¡û
>C241096711
CP045434
Alphaproteobacteria
Sphingomonas ginsengisoli An et al. 2013 KACC 16858 [CP045434]
1548844
1548755
-
Ser
CGA
-
¡û
>W2310025414
BSOO01000020
Alphaproteobacteria
Sphingomonas astaxanthinifaciens NBRC 102146 [BSOO]
33187
33098
-
Ser
CGA
[ENA]
¡û
>W1510639845
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
846027
845938
-
Ser
CGA
[ENA]
¡û
>W1610724253
LMDZ01000005
Alphaproteobacteria
Phenylobacterium sp. Root1277 [LMDZ]
959434
959345
-
Ser
CGA
[ENA]
¡û
>W1610724522
LMEE01000001
Alphaproteobacteria
Phenylobacterium sp. Root1290 [LMEE]
1772646
1772735
+
Ser
CGA
[ENA]
¡û
>W1610729148
LMHT01000034
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
294612
294523
-
Ser
CGA
[ENA]
¡û
>W1610730044
LMIM01000005
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
1694560
1694649
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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