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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273751 (11 seq.)
>WENV180100604
OAOS01000072
[OAOS] marine metagenome; ENVO.00002110
3697
3773
+
Val
GAC
[ENA]
¡û
>WENV180115531
OAPT01005837
[OAPT] marine metagenome; seawater
478
401
-
Val
GAC
[ENA]
¡û
>WENV180208517
OBAJ01000229
[OBAJ] marine metagenome; Coastal water
2957
3032
+
Val
GAC
[ENA]
¡û
>WENV180357383
OBNN01006170
[OBNN] marine metagenome; Coastal water
130
55
-
Val
GAC
[ENA]
¡û
>WENV180358926
OBNQ01057171
[OBNQ] marine metagenome; ENVO 00002150
367
292
-
Val
GAC
[ENA]
¡û
>WENV180380581
OBOR01000331
[OBOR] marine metagenome; ENVO 00002227
2912
2835
-
Val
GAC
[ENA]
¡û
>WENV180390663
OBPL01006943
[OBPL] marine metagenome; Sterivex filter
215
140
-
Val
GAC
[ENA]
¡û
>WENV180396031
OBPU01012221
[OBPU] marine metagenome; ENVO:00002010
396
321
-
Val
GAC
[ENA]
¡û
>WENV180638109
OCRH01012925
[OCRH] marine metagenome; ENVO_00002010
150
225
+
Val
GAC
[ENA]
¡û
>WENV170565161
FAOX01019898
[FAOX] marine metagenome; seawater
223
300
+
Val
GAC
[ENA]
¡û
>WENV074302
AACY023967293
Marine microbial communities from Global Ocean Sampling (GOS)
654
731
+
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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