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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273786 (15 seq.)
>W1711391289
MELI01000057
Actinomycetota
Candidatus Aquicultor primus GWC2_53_9 [MELI]
19464
19389
-
Glu
CTC
[ENA]
¡û
>W1711412044
MGTU01000018
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
37633
37708
+
Glu
CTC
[ENA]
¡û
>W1711412086
MGTV01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
55534
55609
+
Glu
CTC
[ENA]
¡û
>W1711412218
MGTZ01000004
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
36058
35983
-
Glu
CTC
[ENA]
¡û
>W1711412265
MGUA01000007
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
94135
94060
-
Glu
CTC
[ENA]
¡û
>W1711412407
MGUE01000029
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
37624
37699
+
Glu
CTC
[ENA]
¡û
>W1711412476
MGUG01000031
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
74781
74856
+
Glu
CTC
[ENA]
¡û
>W1711412566
MGUI01000052
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
84008
83933
-
Glu
CTC
[ENA]
¡û
>W1711412826
MGVB01000148
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
13195
13270
+
Glu
CTC
[ENA]
¡û
>W1711413011
MGVH01000009
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
30027
30102
+
Glu
CTC
[ENA]
¡û
>WENV183685784
ORMF010900928
[ORMF] groundwater metagenome; groundwater
669
744
+
Glu
CTC
[ENA]
¡û
>W1910727673
MGUP01001008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2858
2783
-
Glu
CTC
[ENA]
¡û
>W1910727868
MGUV01000109
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
45144
45069
-
Glu
CTC
[ENA]
¡û
>W2010861101
MGUP01001008
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
2858
2783
-
Glu
CTC
[ENA]
¡û
>W2010861296
MGUV01000109
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_61_11 [MGUV]
45144
45069
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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