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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273847 (100 seq.)
>W1711578447
MNQT01000022
Bacteroidota
Bacteroides sp. CAG:1060_57_27 [MNQT]
219828
219903
+
Val
TAC
[ENA]
¡û
>W1712038308
NFIV01000004
Bacteroidota
Muribaculum sp. An289 [NFIV]
160993
161070
+
Val
TAC
[ENA]
¡û
>W1712038309
NFIV01000004
Bacteroidota
Muribaculum sp. An289 [NFIV]
165075
165152
+
Val
TAC
[ENA]
¡û
>W1712038400
NFIX01000004
Bacteroidota
Muribaculum sp. An287 [NFIX]
160991
161068
+
Val
TAC
[ENA]
¡û
>W1712038401
NFIX01000004
Bacteroidota
Muribaculum sp. An287 [NFIX]
165073
165150
+
Val
TAC
[ENA]
¡û
>WENV180230783
OBCM01003796
[OBCM] human gut metagenome; human gut
855
780
-
Val
TAC
[ENA]
¡û
>WENV180231379
OBCN01016727
[OBCN] human gut metagenome; human gut
320
245
-
Val
TAC
[ENA]
¡û
>WENV180233757
OBCQ01000310
[OBCQ] human gut metagenome; human gut
13962
13885
-
Val
TAC
[ENA]
¡û
>WENV180324929
OBKS01000497
[OBKS] human gut metagenome; human gut
13923
13846
-
Val
TAC
[ENA]
¡û
>WENV180329197
OBKV01000389
[OBKV] human gut metagenome; human gut
13923
13846
-
Val
TAC
[ENA]
¡û
>WENV180535536
OCHN01000453
[OCHN] human gut metagenome; human gut
43122
43197
+
Val
TAC
[ENA]
¡û
>WENV180562312
OCLB01001357
[OCLB] human gut metagenome; human gut
4
79
+
Val
TAC
[ENA]
¡û
>WENV180563626
OCLD01000041
[OCLD] human gut metagenome; human gut
17299
17376
+
Val
TAC
[ENA]
¡û
>WENV180563648
OCLD01000123
[OCLD] human gut metagenome; human gut
4165
4090
-
Val
TAC
[ENA]
¡û
>WENV180565611
OCLH01000579
[OCLH] human gut metagenome; human gut
6999
7076
+
Val
TAC
[ENA]
¡û
>WENV180567026
OCLL01003072
[OCLL] human gut metagenome; human gut
2644
2721
+
Val
TAC
[ENA]
¡û
>WENV180632452
OCQZ01000580
[OCQZ] human gut metagenome; human gut
18
95
+
Val
TAC
[ENA]
¡û
>WENV180956425
ODUK01001212
[ODUK] human metagenome; G_DNA_Stool
14457
14382
-
Val
TAC
[ENA]
¡û
>WENV180956473
ODUK01001437
[ODUK] human metagenome; G_DNA_Stool
2986
3061
+
Val
TAC
[ENA]
¡û
>WENV181445183
OGDS01001116
[OGDS] metagenome; Human gut stool
240
163
-
Val
TAC
[ENA]
¡û
>WENV181459887
OGEL01001116
[OGEL] metagenome; Human gut stool
240
163
-
Val
TAC
[ENA]
¡û
>WENV181606683
OGLM01000799
[OGLM] metagenome; Human gut stool
22491
22568
+
Val
TAC
[ENA]
¡û
>WENV181655626
OGOB01000227
[OGOB] metagenome; Human gut stool
14050
13973
-
Val
TAC
[ENA]
¡û
>WENV181674790
OGOP01000457
[OGOP] human gut metagenome; faeces
15366
15289
-
Val
TAC
[ENA]
¡û
>WENV181683182
OGOV01000012
[OGOV] human gut metagenome; faeces
185694
185771
+
Val
TAC
[ENA]
¡û
>WENV181687611
OGOX01002885
[OGOX] human gut metagenome; faeces
216
141
-
Val
TAC
[ENA]
¡û
>WENV181772080
OGRD01000154
[OGRD] human gut metagenome; faeces
9294
9369
+
Val
TAC
[ENA]
¡û
>WENV182012199
OHBM01011795
[OHBM] human gut metagenome; faeces
970
893
-
Val
TAC
[ENA]
¡û
>WENV182025316
OHCI01001086
[OHCI] human gut metagenome; feces
3175
3250
+
Val
TAC
[ENA]
¡û
>WENV182046994
OHDW01004451
[OHDW] human gut metagenome; feces
2900
2975
+
Val
TAC
[ENA]
¡û
>WENV182073926
OHFP01000487
[OHFP] human gut metagenome; feces
203
128
-
Val
TAC
[ENA]
¡û
>WENV182116426
OHJC01000393
[OHJC] human gut metagenome; feces
8166
8091
-
Val
TAC
[ENA]
¡û
>WENV182117405
OHJE01000488
[OHJE] human gut metagenome; feces
10280
10205
-
Val
TAC
[ENA]
¡û
>WENV182120660
OHJK01000178
[OHJK] human gut metagenome; feces
6763
6838
+
Val
TAC
[ENA]
¡û
>WENV182128105
OHJY01000063
[OHJY] human gut metagenome; feces
9295
9370
+
Val
TAC
[ENA]
¡û
>WENV182134758
OHKI01000736
[OHKI] human gut metagenome; feces
3469
3394
-
Val
TAC
[ENA]
¡û
>WENV182171699
OHMX01012306
[OHMX] human gut metagenome; feces
3
78
+
Val
TAC
[ENA]
¡û
>WENV182184569
OHOA01000155
[OHOA] human gut metagenome; feces
39223
39148
-
Val
TAC
[ENA]
¡û
>WENV182229869
OHRJ01014813
[OHRJ] human gut metagenome; feces
204
279
+
Val
TAC
[ENA]
¡û
>WENV182243344
OHSI01000139
[OHSI] human gut metagenome; feces
23360
23435
+
Val
TAC
[ENA]
¡û
>WENV182259785
OHTI01000390
[OHTI] human gut metagenome; feces
3585
3510
-
Val
TAC
[ENA]
¡û
>WENV182281192
OHVB01000172
[OHVB] human gut metagenome; feces
11432
11355
-
Val
TAC
[ENA]
¡û
>WENV182282242
OHVH01004575
[OHVH] human gut metagenome; feces
1269
1346
+
Val
TAC
[ENA]
¡û
>WENV182285889
OHVO01000377
[OHVO] human gut metagenome; feces
8268
8345
+
Val
TAC
[ENA]
¡û
>WENV182292521
OHWB01000142
[OHWB] human gut metagenome; feces
11432
11355
-
Val
TAC
[ENA]
¡û
>WENV182335891
OHZS01000449
[OHZS] human gut metagenome; feces
15783
15860
+
Val
TAC
[ENA]
¡û
>WENV182348414
OIAZ01000556
[OIAZ] human gut metagenome; feces
136
59
-
Val
TAC
[ENA]
¡û
>WENV182365829
OICK01000159
[OICK] human gut metagenome; feces
12630
12553
-
Val
TAC
[ENA]
¡û
>WENV182368456
OICN01001154
[OICN] human gut metagenome; feces
5041
5118
+
Val
TAC
[ENA]
¡û
>WENV182369809
OICR01039135
[OICR] human gut metagenome; feces
403
480
+
Val
TAC
[ENA]
¡û
>WENV182393642
OIEI01000199
[OIEI] human gut metagenome; human gut
19849
19926
+
Val
TAC
[ENA]
¡û
>WENV182398245
OIEN01000883
[OIEN] human gut metagenome; human gut
15403
15326
-
Val
TAC
[ENA]
¡û
>WENV182514036
OIWM01003002
[OIWM] human gut metagenome; faeces
9294
9369
+
Val
TAC
[ENA]
¡û
>WENV182527739
OIWU01000699
[OIWU] human gut metagenome; faeces
14040
13963
-
Val
TAC
[ENA]
¡û
>WENV182532812
OIXA01004692
[OIXA] human gut metagenome; faeces
9294
9369
+
Val
TAC
[ENA]
¡û
>WENV182606897
OJJU01000328
[OJJU] metagenome; faeces
18878
18955
+
Val
TAC
[ENA]
¡û
>WENV182608832
OJJV01000830
[OJJV] metagenome; faeces
312
235
-
Val
TAC
[ENA]
¡û
>WENV182625652
OJKP01000776
[OJKP] metagenome; faeces
2566
2489
-
Val
TAC
[ENA]
¡û
>WENV182660902
OJMM01014521
[OJMM] human gut metagenome; feces
1938
1861
-
Val
TAC
[ENA]
¡û
>WENV182663261
OJMO01005022
[OJMO] human gut metagenome; feces
3060
2983
-
Val
TAC
[ENA]
¡û
>WENV182868085
OKRS01001584
[OKRS] human gut metagenome; faeces
6126
6049
-
Val
TAC
[ENA]
¡û
>WENV182892518
OKSI01000645
[OKSI] human gut metagenome; feces
3482
3407
-
Val
TAC
[ENA]
¡û
>WENV182928399
OKUO01000388
[OKUO] human gut metagenome; feces
15752
15829
+
Val
TAC
[ENA]
¡û
>WENV183035952
OLGA01000027
[OLGA] human gut metagenome; faeces
14050
13973
-
Val
TAC
[ENA]
¡û
>WENV183044286
OLGE01000678
[OLGE] human gut metagenome; faeces
14379
14302
-
Val
TAC
[ENA]
¡û
>WENV183122716
OLNW01000018
[OLNW] human gut metagenome; faeces
14055
13978
-
Val
TAC
[ENA]
¡û
>WENV183146697
OLOM01016435
[OLOM] human gut metagenome; faeces
1633
1558
-
Val
TAC
[ENA]
¡û
>WENV183160873
OLOV01001233
[OLOV] human gut metagenome; faeces
12404
12327
-
Val
TAC
[ENA]
¡û
>WENV183250633
OLRH01002716
[OLRH] human gut metagenome; faeces
7260
7183
-
Val
TAC
[ENA]
¡û
>WENV183279658
OLSB01000682
[OLSB] human gut metagenome; faeces
24140
24217
+
Val
TAC
[ENA]
¡û
>WENV183283508
OLSD01000659
[OLSD] human gut metagenome; faeces
5258
5333
+
Val
TAC
[ENA]
¡û
>WENV183293510
OLSK01000669
[OLSK] human gut metagenome; faeces
16809
16886
+
Val
TAC
[ENA]
¡û
>WENV183322624
OLVX01003608
[OLVX] human gut metagenome; faeces
9296
9371
+
Val
TAC
[ENA]
¡û
>WENV183346714
OLWT01000036
[OLWT] human gut metagenome; feces
38062
37987
-
Val
TAC
[ENA]
¡û
>WENV183351680
OLWZ01000170
[OLWZ] human gut metagenome; feces
19798
19873
+
Val
TAC
[ENA]
¡û
>WENV183364633
OLXN01000038
[OLXN] human gut metagenome; feces
38062
37987
-
Val
TAC
[ENA]
¡û
>WENV183378323
OLYC01000301
[OLYC] human gut metagenome; feces
29249
29326
+
Val
TAC
[ENA]
¡û
>WENV183383918
OLYN01000197
[OLYN] human gut metagenome; feces
14015
13938
-
Val
TAC
[ENA]
¡û
>WENV183387682
OLYY01001170
[OLYY] human gut metagenome; feces
5002
5079
+
Val
TAC
[ENA]
¡û
>WENV183402559
OLZV01000765
[OLZV] human gut metagenome; feces
5348
5271
-
Val
TAC
[ENA]
¡û
>WENV183405033
OLZZ01000820
[OLZZ] human gut metagenome; feces
3844
3767
-
Val
TAC
[ENA]
¡û
>WENV183417211
OMAT01003556
[OMAT] human gut metagenome; feces
220
145
-
Val
TAC
[ENA]
¡û
>WENV183422434
OMBE01001132
[OMBE] human gut metagenome; feces
2808
2733
-
Val
TAC
[ENA]
¡û
>WENV183423146
OMBG01000173
[OMBG] human gut metagenome; feces
21347
21424
+
Val
TAC
[ENA]
¡û
>WENV183426232
OMBL01006589
[OMBL] human gut metagenome; feces
2708
2785
+
Val
TAC
[ENA]
¡û
>WENV183446865
OMCS01000157
[OMCS] human gut metagenome; feces
21891
21968
+
Val
TAC
[ENA]
¡û
>WENV183458768
OMDN01000041
[OMDN] human gut metagenome; feces
11250
11173
-
Val
TAC
[ENA]
¡û
>WENV183460466
OMDQ01001991
[OMDQ] human gut metagenome; feces
1608
1685
+
Val
TAC
[ENA]
¡û
>WENV183519767
OMNT01002031
[OMNT] human gut metagenome; faeces
13859
13784
-
Val
TAC
[ENA]
¡û
>WENV183640314
OQVL01003026
[OQVL] human gut metagenome; human gut
3068
3143
+
Val
TAC
[ENA]
¡û
>WENV183642927
OQVO01000163
[OQVO] human gut metagenome; human gut
10462
10385
-
Val
TAC
[ENA]
¡û
>WENV183643764
OQVP01000112
[OQVP] human gut metagenome; human gut
22049
21974
-
Val
TAC
[ENA]
¡û
>WENV183644997
OQVQ01000413
[OQVQ] human gut metagenome; human gut
11269
11192
-
Val
TAC
[ENA]
¡û
>WENV183646165
OQVR01000260
[OQVR] human gut metagenome; human gut
22745
22822
+
Val
TAC
[ENA]
¡û
>WENV183647319
OQVS01000301
[OQVS] human gut metagenome; human gut
13858
13781
-
Val
TAC
[ENA]
¡û
>WENV183653671
OQWA01000095
[OQWA] human gut metagenome; human gut
6883
6960
+
Val
TAC
[ENA]
¡û
>WENV170028886
CDYF01021334
[CDYF] gut metagenome; human stools
10585
10508
-
Val
TAC
[ENA]
¡û
>WENV170032809
CDYK01012478
[CDYK] gut metagenome; human stools
10835
10758
-
Val
TAC
[ENA]
¡û
>WENV170776399
LXOW01163108
[LXOW] bovine gut metagenome; Cow rumen
226
149
-
Val
TAC
[ENA]
¡û
>W2130012360
JABGCK010001693
Actinomycetota
Blastococcus aggregatus CPCC 205347 [JABGCK]
546
469
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK