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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273862 (8 seq.)
>W1711414912
MHAA01000124
Ignavibacteriota
Stygiobacter sp. GWC2_38_9 GWC2_38_9 [MHAA]
20708
20633
-
Lys
CTT
[ENA]
¡û
>W1711415199
MHAM01000030
Ignavibacteriota
Stygiobacter sp. RIFOXYA12_FULL_38_9 RIFOXYA12_FULL_38_9 [MHAM]
15298
15373
+
Lys
CTT
[ENA]
¡û
>W1711415344
MHAQ01000107
Ignavibacteriota
Stygiobacter sp. RIFOXYA2_FULL_38_8 RIFOXYA2_FULL_38_8 [MHAQ]
111
36
-
Lys
CTT
[ENA]
¡û
>W1711415476
MHAU01000034
Ignavibacteriota
Stygiobacter sp. RIFOXYB2_FULL_37_11 RIFOXYB2_FULL_37_11 [MHAU]
378429
378504
+
Lys
CTT
[ENA]
¡û
>W1711415561
MHAW01000118
Ignavibacteriota
Stygiobacter sp. RIFOXYC12_FULL_38_8 RIFOXYC12_FULL_38_8 [MHAW]
22800
22875
+
Lys
CTT
[ENA]
¡û
>W1711415695
MHAZ01000021
Ignavibacteriota
Stygiobacter sp. RIFOXYC2_FULL_38_25 RIFOXYC2_FULL_38_25 [MHAZ]
706946
707021
+
Lys
CTT
[ENA]
¡û
>W1711416250
MHBR01000010
Ignavibacteriota
Stygiobacter sp. GWF2_38_21 GWF2_38_21 [MHBR]
20655
20580
-
Lys
CTT
[ENA]
¡û
>WENV180260817
OBEQ011234433
[OBEQ] groundwater metagenome; groundwater
412
485
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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