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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273863 (9 seq.)
>WENV180346916
OBLN01408636
[OBLN] sediment metagenome; sediment
197
122
-
Val
GAC
[ENA]
¡û
>W1810695757
QLNV01000015
Bacteroidota
Sinomicrobium sp. N-1-3-6 [QLNV]
88794
88719
-
Val
GAC
[ENA]
¡û
>W2011328933
QXMP01000011
Bacteroidota
Robertkochia marina CC-AMO-30D [QXMP]
47025
47100
+
Val
GAC
[ENA]
¡û
>W2011690611
SSMC01000003
Bacteroidota
Robertkochia marina CC-AMO-30D [SSMC]
591071
590996
-
Val
GAC
[ENA]
¡û
>W2110269025
JACVDC010000006
Bacteroidota
Sinomicrobium sp. FJxs [JACVDC]
10567
10492
-
Val
GAC
[ENA]
¡û
>W2110690217
JAINZT010000005
Bacteroidota
Robertkochia marina 3YJGBD-35 [JAINZT]
532469
532394
-
Val
GAC
[ENA]
¡û
>C231258282
CP089211
Bacteroidota
Sinomicrobium kalidii HD2P242 [CP089211]
2900156
2900081
-
Val
GAC
-
¡û
>W2130036513
JAHKRR010000003
Bacteroidota
Sinomicrobium sp. 2019215 [JAHKRR]
184656
184731
+
Val
GAC
[ENA]
¡û
>W1710580281
FPJE01000017
Bacteroidota
Sinomicrobium oceani [FPJE]
60108
60183
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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