This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273894 (138 seq.)
>W131001810
AGYL01000015
Bacillota
Enterocloster clostridioformis 90A6 [AGYL]
656301
656375
+
Pro
TGG
[ENA]
¡û
>W131001879
AGYM01000026
Bacillota
Enterocloster clostridioformis 90A4 [AGYM]
184048
184122
+
Pro
TGG
[ENA]
¡û
>W131002015
AGYO01000015
Bacillota
Enterocloster clostridioformis 90B1 [AGYO]
481913
481839
-
Pro
TGG
[ENA]
¡û
>W131002084
AGYP01000012
Bacillota
Enterocloster clostridioformis 90A1 [AGYP]
133187
133113
-
Pro
TGG
[ENA]
¡û
>W131002131
AGYQ01000002
Bacillota
Enterocloster clostridioformis 90A3 [AGYQ]
481848
481774
-
Pro
TGG
[ENA]
¡û
>W131002193
AGYR01000001
Bacillota
Enterocloster clostridioformis 90A8 [AGYR]
172988
173062
+
Pro
TGG
[ENA]
¡û
>W131002263
AGYS01000003
Bacillota
Enterocloster clostridioformis CM201 [AGYS]
358959
358885
-
Pro
TGG
[ENA]
¡û
>W131196225
ASTD01000118
Bacillota
Dorea sp. 5-2 [ASTD]
56117
56191
+
Pro
TGG
[ENA]
¡û
>W1712042323
NFLQ01000014
Bacillota
Lachnoclostridium sp. An118 [NFLQ]
40100
40178
+
Pro
TGG
[ENA]
¡û
>C171130236
LT635479
Bacillota
Lachnoclostridium phocaeense Marseille-P3177 [LT635479]
3331010
3331088
+
Pro
TGG
-
¡û
>WENV180156893
OAUW01000216
[OAUW] human gut metagenome; faeces
19958
19884
-
Pro
TGG
[ENA]
¡û
>WENV180410794
OBUX01006287
[OBUX] human gut metagenome; faeces
156
82
-
Pro
TGG
[ENA]
¡û
>WENV180447006
OBXC01006555
[OBXC] human gut metagenome; faeces
1772
1846
+
Pro
TGG
[ENA]
¡û
>WENV180447105
OBXC01012629
[OBXC] human gut metagenome; faeces
155
81
-
Pro
TGG
[ENA]
¡û
>WENV180466761
OBYG01008309
[OBYG] human gut metagenome; faeces
313
237
-
Pro
TGG
[ENA]
¡û
>WENV181242576
OFFG01000795
[OFFG] mouse gut metagenome; faeces
21917
21993
+
Pro
TGG
[ENA]
¡û
>WENV181247005
OFFK01003317
[OFFK] mouse gut metagenome; faeces
5202
5278
+
Pro
TGG
[ENA]
¡û
>WENV181247107
OFFK01005758
[OFFK] mouse gut metagenome; faeces
1013
1087
+
Pro
TGG
[ENA]
¡û
>WENV181269693
OFGE01005324
[OFGE] mouse gut metagenome; faeces
555
631
+
Pro
TGG
[ENA]
¡û
>WENV181269930
OFGE01014284
[OFGE] mouse gut metagenome; faeces
1678
1754
+
Pro
TGG
[ENA]
¡û
>WENV181272233
OFGG01005058
[OFGG] mouse gut metagenome; faeces
487
561
+
Pro
TGG
[ENA]
¡û
>WENV181291474
OFHB01032529
[OFHB] mouse gut metagenome; faeces
649
573
-
Pro
TGG
[ENA]
¡û
>W08003156
ABFY02000030
Bacillota
[Clostridium] scindens ATCC 35704 [ABFY]
169737
169661
-
Pro
TGG
[ENA]
¡û
>W141224205
BAHS01000049
Bacillota
[Clostridium] scindens VE202-05 [BAHS]
18044
18120
+
Pro
TGG
[ENA]
¡û
>WENV182506556
OIVA01019552
[OIVA] human gut metagenome; human gut
326
400
+
Pro
TGG
[ENA]
¡û
>WENV182507864
OIVO01009093
[OIVO] human gut metagenome; human gut
511
437
-
Pro
TGG
[ENA]
¡û
>WENV182599994
OJJF01002930
[OJJF] metagenome; faeces
2153
2227
+
Pro
TGG
[ENA]
¡û
>WENV182621566
OJKJ01000082
[OJKJ] metagenome; faeces
351
277
-
Pro
TGG
[ENA]
¡û
>WENV182783513
OJSG01000189
[OJSG] human gut metagenome; human gut
37699
37775
+
Pro
TGG
[ENA]
¡û
>WENV182787510
OJSK01000239
[OJSK] human gut metagenome; human gut
35271
35195
-
Pro
TGG
[ENA]
¡û
>WENV182824842
OKCG01000036
[OKCG] human gut metagenome; human gut
13682
13608
-
Pro
TGG
[ENA]
¡û
>WENV183537148
OOAG01042690
[OOAG] human gut metagenome; human gut
14
88
+
Pro
TGG
[ENA]
¡û
>WENV183762721
PPYE01280753
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
288
214
-
Pro
TGG
[ENA]
¡û
>WENV183763612
PPYE01300911
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2804
2880
+
Pro
TGG
[ENA]
¡û
>WENV183770599
PPYE01437961
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
670
593
-
Pro
TGG
[ENA]
¡û
>WENV183782246
PPYF01214548
[PPYF] human gut metagenome; stool from patient with Crohn's disease
174
100
-
Pro
TGG
[ENA]
¡û
>WENV183784185
PPYF01248229
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2885
2961
+
Pro
TGG
[ENA]
¡û
>WENV183791295
PPYF01433106
[PPYF] human gut metagenome; stool from patient with Crohn's disease
176
102
-
Pro
TGG
[ENA]
¡û
>WENV183791970
PPYF01443302
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2087
2163
+
Pro
TGG
[ENA]
¡û
>WENV170066196
CDZN01004891
[CDZN] gut metagenome; human stools
51526
51452
-
Pro
TGG
[ENA]
¡û
>WENV170067139
CDZO01001928
[CDZO] gut metagenome; human stools
13730
13804
+
Pro
TGG
[ENA]
¡û
>C181230106
LT990039
Bacillota
Massilistercora timonensis Marseille-P3756 [LT990039]
893995
893921
-
Pro
TGG
-
¡û
>C191148158
CP036170
Bacillota
[Clostridium] scindens ATCC 35704 [CP036170]
604911
604835
-
Pro
TGG
-
¡û
>W09113050
ABYI02000020
Bacillota
[Clostridium] hylemonae DSM 15053 [ABYI]
124204
124128
-
Pro
TGG
[ENA]
¡û
>W1910180342
BJLB01000001
Bacillota
[Clostridium] clostridioforme NBRC 113352 [BJLB]
4702146
4702072
-
Pro
TGG
[ENA]
¡û
>W1810812118
QRYR01000009
Bacillota
Clostridium sp. AF15-17LB [QRYR]
28201
28125
-
Pro
TGG
[ENA]
¡û
>W1810905011
QVET01000003
Bacillota
Enterocloster citroniae AF29-4 [QVET]
473076
473002
-
Pro
TGG
[ENA]
¡û
>W2010094168
BJLB01000001
Bacillota
[Clostridium] clostridioforme NBRC 113352 [BJLB]
4702146
4702072
-
Pro
TGG
[ENA]
¡û
>W2010250390
CABIYE020000003
Bacillota
Clostridiaceae bacterium [CABIYE]
191834
191758
-
Pro
TGG
[ENA]
¡û
>W2010256337
CABJCC020000009
Bacillota
Clostridiaceae bacterium [CABJCC]
28201
28125
-
Pro
TGG
[ENA]
¡û
>W2010257717
CABJDD020000003
Bacillota
[Clostridium] citroniae [CABJDD]
473076
473002
-
Pro
TGG
[ENA]
¡û
>W2010262663
CABKNF020000014
Bacillota
[Clostridium] scindens [CABKNF]
169737
169661
-
Pro
TGG
[ENA]
¡û
>W2010267407
CABKQO020000002
Bacillota
[Clostridium] clostridioforme [CABKQO]
663415
663489
+
Pro
TGG
[ENA]
¡û
>W2010273009
CABKUL020000002
Bacillota
Lachnospiraceae bacterium [CABKUL]
767441
767517
+
Pro
TGG
[ENA]
¡û
>W2010277618
CABLCF020000078
Bacillota
[Clostridium] hylemonae [CABLCF]
87577
87501
-
Pro
TGG
[ENA]
¡û
>W2010283034
CABMJH010000006
Bacillota
Eubacteriaceae bacterium [CABMJH]
52064
52141
+
Pro
TGG
[ENA]
¡û
>W2010477339
JAAIND010000034
Bacillota
Enterocloster clostridioformis MSK.2.80 [JAAIND]
51374
51300
-
Pro
TGG
[ENA]
¡û
>W2010484898
JAAISN010000004
Bacillota
[Clostridium] scindens MSK.5.24 [JAAISN]
264877
264953
+
Pro
TGG
[ENA]
¡û
>W2010484938
JAAISO010000003
Bacillota
[Clostridium] scindens MSK.1.26 [JAAISO]
161544
161468
-
Pro
TGG
[ENA]
¡û
>W2010484991
JAAISP010000003
Bacillota
[Clostridium] scindens MSK.1.16 [JAAISP]
160440
160364
-
Pro
TGG
[ENA]
¡û
>W2010485056
JAAISQ010000034
Bacillota
Enterocloster clostridioformis MSK.2.98 [JAAISQ]
51374
51300
-
Pro
TGG
[ENA]
¡û
>W2010485120
JAAISR010000034
Bacillota
Enterocloster clostridioformis MSK.2.94 [JAAISR]
51374
51300
-
Pro
TGG
[ENA]
¡û
>W2010485183
JAAISS010000034
Bacillota
Enterocloster clostridioformis MSK.2.90 [JAAISS]
51374
51300
-
Pro
TGG
[ENA]
¡û
>W2010485238
JAAIST010000007
Bacillota
Enterocloster clostridioformis MSK.2.78 [JAAIST]
89057
89131
+
Pro
TGG
[ENA]
¡û
>W2010485307
JAAISU010000033
Bacillota
Enterocloster clostridioformis MSK.2.63 [JAAISU]
51374
51300
-
Pro
TGG
[ENA]
¡û
>W2010485351
JAAISV010000001
Bacillota
Enterocloster clostridioformis MSK.2.59 [JAAISV]
89080
89154
+
Pro
TGG
[ENA]
¡û
>W2010485418
JAAISW010000008
Bacillota
Enterocloster clostridioformis MSK.2.26 [JAAISW]
89057
89131
+
Pro
TGG
[ENA]
¡û
>W2010608416
JABMIB010000034
Bacillota
Enterocloster clostridioformis MSK.2.73 [JABMIB]
51374
51300
-
Pro
TGG
[ENA]
¡û
>W2011638438
SMMX01000018
Bacillota
Extibacter muris DSM 28560 [SMMX]
44708
44632
-
Pro
TGG
[ENA]
¡û
>W2011667550
SPFR01000006
Bacillota
[Clostridium] hylemonae BSD2780061688st1_A6 [SPFR]
74338
74262
-
Pro
TGG
[ENA]
¡û
>W2011668479
SPGN01000010
Bacillota
[Clostridium] clostridioforme 1001175st1_C5 [SPGN]
30494
30568
+
Pro
TGG
[ENA]
¡û
>W2011668804
SPGT01000002
Bacillota
Clostridium sp. BSD2780061688st1 H5 BSD2780061688st1_H5 [SPGT]
15529
15606
+
Pro
TGG
[ENA]
¡û
>W2011764938
UAVW01000017
Bacillota
[Clostridium] clostridioforme NCTC11224 [UAVW]
306697
306623
-
Pro
TGG
[ENA]
¡û
>W2012153904
VULY01000018
Bacillota
Clostridiaceae bacterium 68-1-5 [VULY]
811430
811353
-
Pro
TGG
[ENA]
¡û
>W2012154058
VUMB01000058
Bacillota
[Clostridium] scindens BL-389-WT-3D [VUMB]
2363
2287
-
Pro
TGG
[ENA]
¡û
>W2012445687
WUQX01000001
Bacillota
Lachnospiraceae bacterium WCA-9-b2 [WUQX]
3947470
3947546
+
Pro
TGG
[ENA]
¡û
>W2012445691
WUQX01000001
Bacillota
Lachnospiraceae bacterium WCA-9-b2 [WUQX]
5331636
5331562
-
Pro
TGG
[ENA]
¡û
>W2110102763
CAJFSM010000077
Bacillota
Eubacterium sp. ER2 [CAJFSM]
2860
2937
+
Pro
TGG
[ENA]
¡û
>W2110123098
CAJTAN010000016
Bacillota
Blautia coccoides [CAJTAN]
582
506
-
Pro
TGG
[ENA]
¡û
>W2110128985
CAJTHK010000008
Bacillota
Blautia coccoides [CAJTHK]
39402
39478
+
Pro
TGG
[ENA]
¡û
>W2110177472
JABFCH010000018
Bacillota
Extibacter sp. GGCC_0201 [JABFCH]
26789
26713
-
Pro
TGG
[ENA]
¡û
>W2110238670
JACLYY010000002
Bacillota
Faecalicatena fissicatena An773 [JACLYY]
200987
200910
-
Pro
TGG
[ENA]
¡û
>W2110258242
JACSNM010000046
Bacillota
Faecalicatena contorta An846 [JACSNM]
653
576
-
Pro
TGG
[ENA]
¡û
>W2110258312
JACSNO010000002
Bacillota
Faecalicatena contorta An826 [JACSNO]
7158
7235
+
Pro
TGG
[ENA]
¡û
>W2110303210
JADCKL010000002
Bacillota
Sellimonas monacensis DSM 108991 [JADCKL]
396819
396742
-
Pro
TGG
[ENA]
¡û
>W2110340572
JADMRI010000002
Bacillota
Eubacterium sp. BSD2780061688b_171218_H5 [JADMRI]
15529
15606
+
Pro
TGG
[ENA]
¡û
>W2110344397
JADMWI010000010
Bacillota
Enterocloster clostridioformis 1001175B_160314_C5 [JADMWI]
30494
30568
+
Pro
TGG
[ENA]
¡û
>W2110344889
JADMXC010000005
Bacillota
Enterocloster citroniae J1101437_171009_D5 [JADMXC]
97271
97345
+
Pro
TGG
[ENA]
¡û
>W2110364806
JADPAG010000006
Bacillota
Enterocloster clostridioformis J1101653_170612_A4 [JADPAG]
98919
98845
-
Pro
TGG
[ENA]
¡û
>C211260679
CP069444
Bacillota
[Clostridium] scindens FDAARGOS_1227 [CP069444]
3027605
3027529
-
Pro
TGG
-
¡û
>W2110708492
JAIWZC010000001
Bacillota
Enterocloster clostridioformis FDAARGOS_1529 [JAIWZC]
4527599
4527673
+
Pro
TGG
[ENA]
¡û
>W2110725255
JAJCHA010000014
Bacillota
Enterocloster citroniae SL.3.11 [JAJCHA]
83247
83173
-
Pro
TGG
[ENA]
¡û
>W2110731343
JAJCOJ010000002
Bacillota
Faecalimonas umbilicata DFI.1.51 [JAJCOJ]
80827
80751
-
Pro
TGG
[ENA]
¡û
>W2110734283
JAJCRU010000008
Bacillota
Extibacter muris SL.2.04 [JAJCRU]
119406
119482
+
Pro
TGG
[ENA]
¡û
>C211378842
CP080442
Bacillota
[Clostridium] scindens Q4 [CP080442]
3401848
3401772
-
Pro
TGG
-
¡û
>C231005945
AP024845
Bacillota
Eubacterium sp. c-25 [AP024845]
1791911
1791987
+
Pro
TGG
-
¡û
>C231006005
AP024846
Bacillota
[Clostridium] scindens G10 [AP024846]
2826442
2826366
-
Pro
TGG
-
¡û
>C231016014
AP025566
Bacillota
[Clostridium] hylemonae CE91-St63 [AP025566]
3243936
3243860
-
Pro
TGG
-
¡û
>C231016157
AP025569
Bacillota
[Clostridium] scindens CE91-St59 [AP025569]
3027498
3027422
-
Pro
TGG
-
¡û
>C231016213
AP025570
Bacillota
[Clostridium] scindens CE91-St60 [AP025570]
3027500
3027424
-
Pro
TGG
-
¡û
>C231047183
CP041667
Bacillota
Lachnospiraceae bacterium KGMB03038 [CP041667]
571107
571181
+
Pro
TGG
-
¡û
>C231551749
CP113781
Bacillota
[Clostridium] scindens VPI12708 [CP113781]
3397990
3397914
-
Pro
TGG
-
¡û
>C233000331
AP025573
Bacillota
Lachnospiraceae bacterium CE91-St61 [AP025573]
3401309
3401233
-
Pro
TGG
-
¡û
>C233000352
AP025574
Bacillota
Lachnospiraceae bacterium CE91-St62 [AP025574]
3401310
3401234
-
Pro
TGG
-
¡û
>C241012174
AP027742
Bacillota
Claveliimonas bilis 12BBH14 [AP027742]
2884526
2884450
-
Pro
TGG
-
¡û
>C241012218
AP027743
Bacillota
Claveliimonas bilis 10CPCBH12 [AP027743]
1715083
1715159
+
Pro
TGG
-
¡û
>C241012298
AP027744
Bacillota
Claveliimonas bilis 9CFEGH4 [AP027744]
1897371
1897295
-
Pro
TGG
-
¡û
>C241099101
CP045695
Bacillota
[Clostridium] scindens BL389WT3D [CP045695]
3254292
3254216
-
Pro
TGG
-
¡û
>C241154986
CP053228
Bacillota
Blautia pseudococcoides SCSK [CP053228]
3242588
3242512
-
Pro
TGG
-
¡û
>W2110799452
WQPS01000012
Bacillota
Enterocloster citroniae MCC335 [WQPS]
273448
273522
+
Pro
TGG
[ENA]
¡û
>C241376837
CP143935
Bacillota
[Clostridium] scindens SL.1.22 [CP143935]
3431194
3431118
-
Pro
TGG
-
¡û
>W11105700
ACTR01000005
Bacillota
Lachnospiraceae bacterium 5_1_57FAA [ACTR]
170271
170195
-
Pro
TGG
[ENA]
¡û
>W1511303171
JPJE01000006
Bacillota
Eubacterium sp. ER2 [JPJE]
52064
52142
+
Pro
TGG
[ENA]
¡û
>W1511527491
JYHN01000061
Bacillota
Clostridium sp. FS41 [JYHN]
180584
180658
+
Pro
TGG
[ENA]
¡û
>C161087330
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
5030068
5030144
+
Pro
TGG
[Ensembl]
¡û
>W1610001396
ACTH01000025
Bacillota
Dorea sp. D27 [ACTH]
79648
79724
+
Pro
TGG
[ENA]
¡û
>W1610001899
ADLK01000017
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
54216
54290
+
Pro
TGG
[ENA]
¡û
>W1610001988
ADLM01000098
Bacillota
Enterocloster clostridioformis WAL-7855 [ADLM]
51760
51686
-
Pro
TGG
[ENA]
¡û
>W1610058000
BBZN01000003
Bacillota
Clostridia bacterium UC5.1-1D2 [BBZN]
179365
179439
+
Pro
TGG
[ENA]
¡û
>W1610101940
CZAB01000011
Bacillota
Enterocloster clostridioformis [CZAB]
20121
20195
+
Pro
TGG
[ENA]
¡û
>W121001521
ADLJ01000014
Bacillota
Enterocloster citroniae WAL-17108 [ADLJ]
123905
123831
-
Pro
TGG
[ENA]
¡û
>W121001589
ADLL01000027
Bacillota
Enterocloster clostridioformis 2_1_49FAA [ADLL]
376599
376673
+
Pro
TGG
[ENA]
¡û
>W1610188095
FBWL01000151
Bacillota
Clostridium sp. C105KSO13 [FBWL]
2509
2433
-
Pro
TGG
[ENA]
¡û
>W1610188204
FBWO01000048
Bacillota
Clostridium sp. C105KSO14 [FBWO]
21480
21554
+
Pro
TGG
[ENA]
¡û
>W1610501785
FLKL01000002
Bacillota
Clostridium sp. Marseille-P2538 [FLKL]
3503458
3503382
-
Pro
TGG
[ENA]
¡û
>W1710000233
ACTH01000025
Bacillota
Dorea sp. D27 [ACTH]
79648
79724
+
Pro
TGG
[ENA]
¡û
>W1710003493
ADLK01000017
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
54216
54290
+
Pro
TGG
[ENA]
¡û
>W1710003582
ADLM01000098
Bacillota
Enterocloster clostridioformis WAL-7855 [ADLM]
51760
51686
-
Pro
TGG
[ENA]
¡û
>W1710054759
BBZN01000003
Bacillota
Clostridia bacterium UC5.1-1D2 [BBZN]
179365
179439
+
Pro
TGG
[ENA]
¡û
>W1710104695
CZAB01000011
Bacillota
Enterocloster clostridioformis [CZAB]
20121
20195
+
Pro
TGG
[ENA]
¡û
>W1710189711
FBWL01000151
Bacillota
Clostridium sp. C105KSO13 [FBWL]
2509
2433
-
Pro
TGG
[ENA]
¡û
>W1710189820
FBWO01000048
Bacillota
Clostridium sp. C105KSO14 [FBWO]
21480
21554
+
Pro
TGG
[ENA]
¡û
>W1710495255
FLKL01000002
Bacillota
Clostridium sp. Marseille-P2538 [FLKL]
3503458
3503382
-
Pro
TGG
[ENA]
¡û
>W1710554589
FOIO01000004
Bacillota
Enterocloster clostridioformis [FOIO]
143028
143102
+
Pro
TGG
[ENA]
¡û
>W1710555334
FOJH01000005
Bacillota
Enterocloster clostridioformis [FOJH]
143029
143103
+
Pro
TGG
[ENA]
¡û
>W1710561700
FOOJ01000007
Bacillota
Enterocloster clostridioformis [FOOJ]
103475
103549
+
Pro
TGG
[ENA]
¡û
>W1710575588
FOZH01000001
Bacillota
Enterocloster citroniae [FOZH]
926134
926208
+
Pro
TGG
[ENA]
¡û
>W1710589194
FQZY01000025
Bacillota
Hespellia stercorisuis DSM 15480 [FQZY]
11157
11082
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK