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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273896 (8 seq.)
>W1711392506
MENQ01000019
Bacteroidota
Bacteroidetes bacterium GWC2_46_850 [MENQ]
1625
1548
-
Val
TAC
[ENA]
¡û
>W1711392616
MENT01000007
Bacteroidota
Bacteroidetes bacterium GWD2_45_23 [MENT]
1607
1530
-
Val
TAC
[ENA]
¡û
>W1711629429
MPOX01000032
Bacteroidota
Proteiniphilum sp. EBM-41 [MPOX]
48362
48439
+
Val
TAC
[ENA]
¡û
>WENV170719724
LSQX01124768
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10919
10842
-
Val
TAC
[ENA]
¡û
>WENV170970590
MTKW01078071
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
201
278
+
Val
TAC
[ENA]
¡û
>C151102975
LN515532
Bacteroidota
Fermentimonas caenicola [LN515532]
1071175
1071098
-
Val
TAC
[Ensembl]
¡û
>W2010273108
CABKUN020000001
Bacteroidota
Porphyromonadaceae bacterium [CABKUN]
1088010
1088085
+
Val
TAC
[ENA]
¡û
>W1510562682
CTEJ01000001
Bacteroidota
Lascolabacillus massiliensis SIT8 [CTEJ]
1088010
1088087
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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