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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273899 (40 seq.)
>PL171001004
CP014789
Firmicutes
Lactobacillus oris J-1 plasmid:unnamed2
10500
10576
+
Ile
GAT
[ENA]
¡û
>WENV180442072
OBWW01007959
[OBWW] human gut metagenome; faeces
1325
1401
+
Ile
GAT
[ENA]
¡û
>WENV183772840
PPYF01022836
[PPYF] human gut metagenome; stool from patient with Crohn's disease
142
218
+
Ile
GAT
[ENA]
¡û
>W09128070
ACLL01000038
Bacillota
Limosilactobacillus antri DSM 16041 [ACLL]
1273
1349
+
Ile
GAT
[ENA]
¡û
>W1911594798
PNFV01000012
Bacillota
Lactobacillus pontis UMB0683 [PNFV]
40468
40392
-
Ile
GAT
[ENA]
¡û
>C151003259
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
479522
479598
+
Ile
GAT
[Ensembl]
¡û
>W2010273729
CABKUX020000021
Bacillota
Lactobacillus antri [CABKUX]
201
125
-
Ile
GAT
[ENA]
¡û
>W2011203845
PNFV01000012
Bacillota
Lactobacillus pontis UMB0683 [PNFV]
40468
40392
-
Ile
GAT
[ENA]
¡û
>W2110101172
CAJFMA010000029
Bacillota
Lactobacillus oris [CAJFMA]
9799
9723
-
Ile
GAT
[ENA]
¡û
>W2110315926
JADGID010000043
Bacillota
Limosilactobacillus oris DSM 108973 [JADGID]
1402
1478
+
Ile
GAT
[ENA]
¡û
>C211388442
CP081855
Bacillota
Limosilactobacillus panis MT-01 [CP081855]
230710
230787
+
Ile
GAT
-
¡û
>C211388447
CP081855
Bacillota
Limosilactobacillus panis MT-01 [CP081855]
471109
471185
+
Ile
GAT
-
¡û
>C231491003
CP104398
Bacillota
Limosilactobacillus oris AM_LB10 [CP104398]
13456
13532
+
Ile
GAT
-
¡û
>C231491014
CP104398
Bacillota
Limosilactobacillus oris AM_LB10 [CP104398]
1741910
1741986
+
Ile
GAT
-
¡û
>C241097678
CP045530
Bacillota
Limosilactobacillus pontis LP475 [CP045530]
614081
614157
+
Ile
GAT
-
¡û
>W2130004043
CABFLO010000073
Bacillota
Limosilactobacillus oris [CABFLO]
1352
1428
+
Ile
GAT
[ENA]
¡û
>C241260423
CP125629
Bacillota
Limosilactobacillus oris BSLO1801 [CP125629]
370958
371034
+
Ile
GAT
-
¡û
>C241260432
CP125629
Bacillota
Limosilactobacillus oris BSLO1801 [CP125629]
483654
483730
+
Ile
GAT
-
¡û
>C241260458
CP125629
Bacillota
Limosilactobacillus oris BSLO1801 [CP125629]
612080
612156
+
Ile
GAT
-
¡û
>W11139752
AEKL01000020
Bacillota
Limosilactobacillus oris PB013-T2-3 [AEKL]
1277
1353
+
Ile
GAT
[ENA]
¡û
>W1511639274
LDPB01000188
Bacillota
Limosilactobacillus panis DSM 6035 [LDPB]
263
339
+
Ile
GAT
[ENA]
¡û
>W1511639276
LDPB01000196
Bacillota
Limosilactobacillus panis DSM 6035 [LDPB]
263
341
+
Ile
GAT
[ENA]
¡û
>W11172997
AFTL01000008
Bacillota
Limosilactobacillus oris F0423 [AFTL]
3096
3020
-
Ile
GAT
[ENA]
¡û
>W11173013
AFTL01000009
Bacillota
Limosilactobacillus oris F0423 [AFTL]
4989
5065
+
Ile
GAT
[ENA]
¡û
>W11173020
AFTL01000010
Bacillota
Limosilactobacillus oris F0423 [AFTL]
38540
38464
-
Ile
GAT
[ENA]
¡û
>W11173040
AFTL01000017
Bacillota
Limosilactobacillus oris F0423 [AFTL]
369
445
+
Ile
GAT
[ENA]
¡û
>W11173058
AFTL01000020
Bacillota
Limosilactobacillus oris F0423 [AFTL]
14604
14680
+
Ile
GAT
[ENA]
¡û
>C161077752
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
751074
750998
-
Ile
GAT
-
¡û
>W1610034052
AZDK01000028
Bacillota
Limosilactobacillus antri DSM 16041 [AZDK]
201
125
-
Ile
GAT
[ENA]
¡û
>W1610037653
AZGE01000048
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
1789
1865
+
Ile
GAT
[ENA]
¡û
>W1610037667
AZGE01000052
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
2590
2514
-
Ile
GAT
[ENA]
¡û
>W1610038029
AZGM01000098
Bacillota
Limosilactobacillus panis DSM 6035 [AZGM]
115
191
+
Ile
GAT
[ENA]
¡û
>W1610529161
JQBW01000002
Bacillota
Limosilactobacillus secaliphilus [JQBW]
53
129
+
Ile
GAT
[ENA]
¡û
>W1610529199
JQBW01000009
Bacillota
Limosilactobacillus secaliphilus [JQBW]
1311
1386
+
Ile
GAT
[ENA]
¡û
>W1710031179
AZDK01000028
Bacillota
Limosilactobacillus antri DSM 16041 [AZDK]
201
125
-
Ile
GAT
[ENA]
¡û
>W1710034692
AZGE01000048
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
1789
1865
+
Ile
GAT
[ENA]
¡û
>W1710034706
AZGE01000052
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
2590
2514
-
Ile
GAT
[ENA]
¡û
>W1710035021
AZGM01000098
Bacillota
Limosilactobacillus panis DSM 6035 [AZGM]
115
191
+
Ile
GAT
[ENA]
¡û
>W1710630751
JQBW01000002
Bacillota
Limosilactobacillus secaliphilus [JQBW]
53
129
+
Ile
GAT
[ENA]
¡û
>W1710630789
JQBW01000009
Bacillota
Limosilactobacillus secaliphilus [JQBW]
1311
1386
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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