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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273909 (64 seq.)
>W1710889378
LNAM01000208
Bacillota
Acetivibrio ethanolgignens [LNAM]
38547
38621
+
Pro
CGG
[ENA]
¡û
>WENV180134908
OATK01002652
[OATK] human gut metagenome; faeces
132
58
-
Pro
CGG
[ENA]
¡û
>WENV180207684
OBAI01016608
[OBAI] human gut metagenome; human gut
2308
2382
+
Pro
CGG
[ENA]
¡û
>WENV180277516
OBHX01000201
[OBHX] metagenome; feces
52483
52557
+
Pro
CGG
[ENA]
¡û
>WENV180347187
OBLO01000056
[OBLO] metagenome; feces
47530
47604
+
Pro
CGG
[ENA]
¡û
>WENV180528763
OCHJ01019863
[OCHJ] human gut metagenome; human gut
1135
1061
-
Pro
CGG
[ENA]
¡û
>WENV180618690
OCQB01000373
[OCQB] human gut metagenome; human gut
6079
6153
+
Pro
CGG
[ENA]
¡û
>WENV180629271
OCQP01068179
[OCQP] human gut metagenome; human gut
236
162
-
Pro
CGG
[ENA]
¡û
>WENV180893633
ODMR01010098
[ODMR] human metagenome; G_DNA_Stool
1180
1106
-
Pro
CGG
[ENA]
¡û
>WENV180936709
ODTU01062794
[ODTU] human metagenome; G_DNA_Stool
102
28
-
Pro
CGG
[ENA]
¡û
>WENV180994219
ODVQ01043745
[ODVQ] human metagenome; G_DNA_Stool
90
164
+
Pro
CGG
[ENA]
¡û
>WENV180997317
ODVS01011107
[ODVS] human metagenome; G_DNA_Stool
139
65
-
Pro
CGG
[ENA]
¡û
>WENV181110239
OEEK01001308
[OEEK] human metagenome; G_DNA_Stool
14917
14843
-
Pro
CGG
[ENA]
¡û
>WENV181422846
OGCO01002904
[OGCO] human gut metagenome; human gut
14147
14221
+
Pro
CGG
[ENA]
¡û
>WENV181434511
OGDF01000885
[OGDF] human gut metagenome; human gut
32504
32430
-
Pro
CGG
[ENA]
¡û
>WENV181440161
OGDN01000653
[OGDN] human gut metagenome; human gut
53129
53203
+
Pro
CGG
[ENA]
¡û
>WENV181669604
OGOL01076452
[OGOL] human gut metagenome; faeces
262
188
-
Pro
CGG
[ENA]
¡û
>WENV181700927
OGPH01000074
[OGPH] human gut metagenome; faeces
69516
69442
-
Pro
CGG
[ENA]
¡û
>WENV181718105
OGPT01007732
[OGPT] human gut metagenome; faeces
4788
4862
+
Pro
CGG
[ENA]
¡û
>WENV181740466
OGQJ01008249
[OGQJ] human gut metagenome; faeces
3838
3912
+
Pro
CGG
[ENA]
¡û
>WENV181747014
OGQN01008332
[OGQN] human gut metagenome; faeces
2436
2362
-
Pro
CGG
[ENA]
¡û
>WENV182014117
OHBP01000484
[OHBP] human gut metagenome; feces
18802
18876
+
Pro
CGG
[ENA]
¡û
>WENV182027165
OHCL01031255
[OHCL] human gut metagenome; feces
110
36
-
Pro
CGG
[ENA]
¡û
>WENV182044905
OHDS01002005
[OHDS] human gut metagenome; feces
3529
3603
+
Pro
CGG
[ENA]
¡û
>WENV182109435
OHIN01000470
[OHIN] human gut metagenome; feces
27431
27505
+
Pro
CGG
[ENA]
¡û
>WENV182143876
OHKV01042626
[OHKV] human gut metagenome; feces
282
208
-
Pro
CGG
[ENA]
¡û
>WENV182162277
OHMH01000113
[OHMH] human gut metagenome; feces
27357
27431
+
Pro
CGG
[ENA]
¡û
>WENV182197963
OHPI01000199
[OHPI] human gut metagenome; feces
44491
44565
+
Pro
CGG
[ENA]
¡û
>WENV182245418
OHSK01000319
[OHSK] human gut metagenome; feces
10716
10642
-
Pro
CGG
[ENA]
¡û
>WENV182270765
OHUE01029770
[OHUE] human gut metagenome; feces
258
184
-
Pro
CGG
[ENA]
¡û
>WENV182274929
OHUK01028381
[OHUK] human gut metagenome; feces
384
310
-
Pro
CGG
[ENA]
¡û
>WENV182329493
OHZE01002111
[OHZE] human gut metagenome; feces
3965
4039
+
Pro
CGG
[ENA]
¡û
>WENV182330390
OHZG01000368
[OHZG] human gut metagenome; feces
3955
4029
+
Pro
CGG
[ENA]
¡û
>WENV182334924
OHZQ01004367
[OHZQ] human gut metagenome; feces
2203
2277
+
Pro
CGG
[ENA]
¡û
>WENV182352928
OIBK01052699
[OIBK] human gut metagenome; feces
415
489
+
Pro
CGG
[ENA]
¡û
>WENV182359108
OIBX01000309
[OIBX] human gut metagenome; feces
13514
13440
-
Pro
CGG
[ENA]
¡û
>WENV182414239
OIFY01072206
[OIFY] human gut metagenome; human gut
173
99
-
Pro
CGG
[ENA]
¡û
>WENV182529315
OIWU01032800
[OIWU] human gut metagenome; faeces
618
544
-
Pro
CGG
[ENA]
¡û
>WENV182535184
OIXG01008943
[OIXG] human gut metagenome; faeces
2055
1981
-
Pro
CGG
[ENA]
¡û
>WENV182652855
OJMH01046025
[OJMH] human gut metagenome; feces
1074
1148
+
Pro
CGG
[ENA]
¡û
>WENV182673447
OJNO01015336
[OJNO] human gut metagenome; human gut
192
266
+
Pro
CGG
[ENA]
¡û
>WENV182685212
OJNY01016060
[OJNY] human gut metagenome; human gut
1906
1832
-
Pro
CGG
[ENA]
¡û
>WENV182717211
OJPK01003069
[OJPK] human gut metagenome; stool sample
2167
2241
+
Pro
CGG
[ENA]
¡û
>WENV182903048
OKSX01000957
[OKSX] human gut metagenome; feces
8674
8748
+
Pro
CGG
[ENA]
¡û
>WENV182967774
OKXB01000235
[OKXB] human gut metagenome; human gut
23272
23346
+
Pro
CGG
[ENA]
¡û
>WENV183039969
OLGB01027923
[OLGB] human gut metagenome; faeces
1332
1406
+
Pro
CGG
[ENA]
¡û
>WENV183076521
OLIW01004601
[OLIW] human gut metagenome; feces
7767
7841
+
Pro
CGG
[ENA]
¡û
>WENV183079012
OLIX01008655
[OLIX] human gut metagenome; feces
3801
3727
-
Pro
CGG
[ENA]
¡û
>WENV183198038
OLPV01000413
[OLPV] human gut metagenome; faeces
23396
23470
+
Pro
CGG
[ENA]
¡û
>WENV183201387
OLPW01026987
[OLPW] human gut metagenome; faeces
564
490
-
Pro
CGG
[ENA]
¡û
>WENV183327910
OLWA01002744
[OLWA] human gut metagenome; faeces
2528
2454
-
Pro
CGG
[ENA]
¡û
>WENV183384675
OLYN01009915
[OLYN] human gut metagenome; feces
982
908
-
Pro
CGG
[ENA]
¡û
>WENV183389377
OLZA01042401
[OLZA] human gut metagenome; feces
270
196
-
Pro
CGG
[ENA]
¡û
>WENV183420649
OMBA01013638
[OMBA] human gut metagenome; feces
1341
1415
+
Pro
CGG
[ENA]
¡û
>WENV183423539
OMBG01002821
[OMBG] human gut metagenome; feces
4583
4509
-
Pro
CGG
[ENA]
¡û
>WENV183447540
OMCS01013419
[OMCS] human gut metagenome; feces
293
367
+
Pro
CGG
[ENA]
¡û
>WENV183507207
OMGY01011194
[OMGY] human gut metagenome; human gut
710
636
-
Pro
CGG
[ENA]
¡û
>WENV183659813
OQWM01060770
[OQWM] human gut metagenome; human gut
537
463
-
Pro
CGG
[ENA]
¡û
>WENV183767832
PPYE01384195
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
49824
49898
+
Pro
CGG
[ENA]
¡û
>WENV170057914
CDZG01056447
[CDZG] gut metagenome; human stools
707
781
+
Pro
CGG
[ENA]
¡û
>WENV170059069
CDZH01032511
[CDZH] gut metagenome; human stools
141
67
-
Pro
CGG
[ENA]
¡û
>WENV170081953
CDZY01033116
[CDZY] gut metagenome; human stools
2348
2274
-
Pro
CGG
[ENA]
¡û
>W2010286884
CABMMD010000208
Bacillota
Acetivibrio ethanolgignens [CABMMD]
38547
38621
+
Pro
CGG
[ENA]
¡û
>W1610749756
LNAM01000208
Bacillota
Acetivibrio ethanolgignens [LNAM]
38547
38621
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK