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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27392 (37 seq.)
>W1710989819
LPWE01000010
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
302008
301919
-
Ser
GGA
[ENA]
¡û
>W1710989854
LPWF01000002
Alphaproteobacteria
Methyloceanibacter superfactus [LPWF]
6263
6174
-
Ser
GGA
[ENA]
¡û
>W1710989899
LPWG01000002
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
43691
43602
-
Ser
GGA
[ENA]
¡û
>W1711256884
LYSZ01000004
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
304288
304377
+
Ser
GGA
[ENA]
¡û
>W131224301
AUCR01000006
Alphaproteobacteria
Cucumibacter marinus DSM 18995 [AUCR]
157319
157230
-
Ser
GGA
[ENA]
¡û
>W1711421727
MHZR01000106
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
5234
5145
-
Ser
GGA
[ENA]
¡û
>W1711421760
MHZS01000052
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
15958
15869
-
Ser
GGA
[ENA]
¡û
>w012817
AAMU01000001
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [AAMU]
951792
951701
-
Ser
GGA
[ENA]
¡û
>WENV180361904
OBNW01008073
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
441
352
-
Ser
GGA
[ENA]
¢þ
>WENV180377690
OBON01084227
[OBON] marine metagenome; sea water
73
162
+
Ser
GGA
[ENA]
¢þ
>WENV183725008
PJQE01122893
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
183
94
-
Ser
GGA
[ENA]
¢þ
>WENV170176978
CEOS01143546
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
565
654
+
Ser
GGA
[ENA]
¢þ
>WENV170576835
FRDC01001869
[FRDC] freshwater metagenome; water
62046
61957
-
Ser
GGA
[ENA]
¢þ
>WENV170578064
FSSH01009224
[FSSH] freshwater metagenome; drinking water
6662
6751
+
Ser
GGA
[ENA]
¢þ
>W141464075
JFKE01000003
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
68551
68462
-
Ser
GGA
[ENA]
¡û
>WENV170963472
MRWG01000206
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
27446
27357
-
Ser
GGA
[ENA]
¢þ
>WENV170964834
MRWG01054129
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
217
128
-
Ser
GGA
[ENA]
¢þ
>C181169766
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
1363267
1363356
+
Ser
GGA
-
¡û
>C181170888
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
1524074
1523985
-
Ser
GGA
-
¡û
>C191090907
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
388180
388269
+
Ser
GGA
-
¡û
>W1910549829
FZQA01000003
Alphaproteobacteria
Amphiplicatus metriothermophilus CGMCC 1.12710 [FZQA]
298067
298156
+
Ser
GGA
[ENA]
¡û
>W1910744060
MHZU01000044
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
294855
294944
+
Ser
GGA
[ENA]
¡û
>W1911410998
NWUC01000003
Alphaproteobacteria
Pararhizobium haloflavum XC0140 [NWUC]
335521
335432
-
Ser
GGA
[ENA]
¡û
>W1911696591
QMEL01000002
Alphaproteobacteria
Pelagibacterium sediminicola IMCC34151 [QMEL]
486220
486309
+
Ser
GGA
[ENA]
¡û
>W1810158033
PJCH01000001
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
415206
415117
-
Ser
GGA
[ENA]
¡û
>W1810779216
QQNH01000003
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
30892
30803
-
Ser
GGA
[ENA]
¡û
>W1810887551
QUQO01000001
Alphaproteobacteria
Parvularcula marina SM1705 [QUQO]
1731272
1731361
+
Ser
GGA
[ENA]
¡û
>C151002845
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
499612
499701
+
Ser
GGA
[Ensembl]
¡û
>C151072514
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
2043890
2043979
+
Ser
GGA
[Ensembl]
¡û
>C10110149
CP002156
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [CP002156]
951787
951698
-
Ser
GGA
[Ensembl]
¡û
>C161070353
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
533104
533193
+
Ser
GGA
[Ensembl]
¡û
>W1610626492
LICH01000098
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
7388
7477
+
Ser
GGA
[ENA]
¡û
>W1610626682
LICP01000083
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
567
478
-
Ser
GGA
[ENA]
¡û
>W1611019909
LYSZ01000004
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
304288
304377
+
Ser
GGA
[ENA]
¡û
>W1710546382
FOCE01000002
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
304199
304110
-
Ser
GGA
[ENA]
¡û
>W1710757619
LICH01000098
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
7388
7477
+
Ser
GGA
[ENA]
¡û
>W1710757809
LICP01000083
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
567
478
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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