This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274000 (60 seq.)
>W1710783817
LJFZ01000012
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
82965
83040
+
Asp
GTC
[ENA]
¡û
>W1710793225
LJPA01000029
Actinomycetota
Frankia sp. ACN1ag [LJPA]
31575
31650
+
Asp
GTC
[ENA]
¡û
>W1711317117
MAXA01000169
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
36190
36115
-
Asp
GTC
[ENA]
¡û
>W1711328851
MBLM01000159
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
11228
11153
-
Asp
GTC
[ENA]
¡û
>W1711328903
MBLN01000059
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
29265
29190
-
Asp
GTC
[ENA]
¡û
>W1711328939
MBLO01000025
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
96176
96101
-
Asp
GTC
[ENA]
¡û
>W1711603532
MOMC01000084
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
25975
26050
+
Asp
GTC
[ENA]
¡û
>W1711603617
MOME01000051
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
3075
3000
-
Asp
GTC
[ENA]
¡û
>W1711612449
MOWP01000028
Actinomycetota
Frankia sp. CcI49 [MOWP]
294766
294841
+
Asp
GTC
[ENA]
¡û
>W131168035
ARDT01000008
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
38685
38610
-
Asp
GTC
[ENA]
¡û
>W131170124
ARFH01000039
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
11212
11137
-
Asp
GTC
[ENA]
¡û
>C009345
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
177989
178063
+
Asp
GTC
[Ensembl]
¡û
>w007097
AAII01000002
Actinomycetota
Frankia sp. EAN1pec [AAII]
122386
122465
+
Asp
GTC
[ENA]
¡û
>C08005081
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
8696218
8696143
-
Asp
GTC
[Ensembl]
¡û
>WENV183092709
OLLJ01000221
[OLLJ] soil metagenome; soil
3452
3527
+
Asp
GTC
[ENA]
¡û
>W1910546344
FZMO01000301
Actinomycetota
Frankia canadensis [FZMO]
13924
13999
+
Asp
GTC
[ENA]
¡û
>W1911504309
OESX01000301
Actinomycetota
Frankia canadensis [OESX]
13924
13999
+
Asp
GTC
[ENA]
¡û
>W2010146043
CAAAFP010000026
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAFP]
3498
3423
-
Asp
GTC
[ENA]
¡û
>W2010146118
CAAAFQ010000084
Actinomycetota
Frankia symbiont of Coriaria arborea [CAAAFQ]
12617
12542
-
Asp
GTC
[ENA]
¡û
>W2010146188
CAAAFS010000025
Actinomycetota
Frankia symbiont of Coriaria myrtifolia [CAAAFS]
3494
3419
-
Asp
GTC
[ENA]
¡û
>W2010146273
CAAAFU010000029
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAFU]
21314
21239
-
Asp
GTC
[ENA]
¡û
>W2010146276
CAAAFU010000031
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAFU]
3542
3467
-
Asp
GTC
[ENA]
¡û
>W2010146280
CAAAFU010000036
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAFU]
97573
97498
-
Asp
GTC
[ENA]
¡û
>W2010146354
CAAAGY010000021
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAGY]
3531
3456
-
Asp
GTC
[ENA]
¡û
>W2010146359
CAAAGY010000028
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAGY]
97743
97668
-
Asp
GTC
[ENA]
¡û
>W2010146431
CAAAGZ010000020
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAGZ]
3497
3422
-
Asp
GTC
[ENA]
¡û
>W2010146479
CAAAHA010000090
Actinomycetota
Frankia symbiont of Coriaria nepalensis [CAAAHA]
3627
3552
-
Asp
GTC
[ENA]
¡û
>W2010146528
CAAAHB010000022
Actinomycetota
Frankia symbiont of Datisca glomerata [CAAAHB]
3499
3424
-
Asp
GTC
[ENA]
¡û
>W2010347719
CADCWS010000076
Actinomycetota
Frankia sp. AgTrS [CADCWS]
3984
3909
-
Asp
GTC
[ENA]
¡û
>W2010347756
CADCWT010000025
Actinomycetota
Frankia sp. AiOr [CADCWT]
31698
31773
+
Asp
GTC
[ENA]
¡û
>W2010363780
CADDZT010000084
Actinomycetota
Candidatus Frankia meridionalis Cppng1 [CADDZT]
12617
12542
-
Asp
GTC
[ENA]
¡û
>W2010363816
CADDZU010000111
Actinomycetota
Frankia symbiont of Alnus glutinosa UmASt1 [CADDZU]
4010
3935
-
Asp
GTC
[ENA]
¡û
>W2010363902
CADDZW010000117
Actinomycetota
Frankia symbiont of Alnus glutinosa UmASH1 [CADDZW]
4003
3928
-
Asp
GTC
[ENA]
¡û
>W2010428029
FZMO01000301
Actinomycetota
Frankia canadensis [FZMO]
13924
13999
+
Asp
GTC
[ENA]
¡û
>W2011162706
OESX01000301
Actinomycetota
Frankia canadensis [OESX]
13924
13999
+
Asp
GTC
[ENA]
¡û
>W2011615528
SJXI01000056
Actinomycetota
Frankia sp. BMG5.11 [SJXI]
182772
182697
-
Asp
GTC
[ENA]
¡û
>W2011693543
SSXH01000592
Actinomycetota
Frankia sp. AvVan [SSXH]
1428
1503
+
Asp
GTC
[ENA]
¡û
>W2011766401
UBIZ01000419
Actinomycetota
Frankia sp. Ea1.12 [UBIZ]
9411
9486
+
Asp
GTC
[ENA]
¡û
>W2110302366
JADBID010000001
Actinomycetota
Frankia sp. CH37 [JADBID]
6214045
6213970
-
Asp
GTC
[ENA]
¡û
>W2110395532
JADWYV010000003
Actinomycetota
Frankia sp. CN4 [JADWYV]
41866
41941
+
Asp
GTC
[ENA]
¡û
>W2110395608
JADWYW010000749
Actinomycetota
Frankia sp. CNm7 [JADWYW]
8159
8084
-
Asp
GTC
[ENA]
¡û
>C211371510
CP079862
Actinomycetota
Frankia sp. ArI3 [CP079862]
2678369
2678294
-
Asp
GTC
-
¡û
>W10114058
ADGT01000054
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
28735
28810
+
Asp
GTC
[ENA]
¡û
>W10114165
ADGX01000012
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
1783
1858
+
Asp
GTC
[ENA]
¡û
>W2130024601
JADWYU010000195
Actinomycetota
Frankia sp. CN7 [JADWYU]
34381
34456
+
Asp
GTC
[ENA]
¡û
>W2130025015
JAEACQ010000163
Actinomycetota
Frankia sp. CN6 [JAEACQ]
34430
34505
+
Asp
GTC
[ENA]
¡û
>C11109391
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
351659
351584
-
Asp
GTC
[Ensembl]
¡û
>W11117394
ADGT01000054
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
28735
28810
+
Asp
GTC
[ENA]
¡û
>W11117501
ADGX01000012
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
1783
1858
+
Asp
GTC
[ENA]
¡û
>W1511479841
JWIO01000054
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
2691
2616
-
Asp
GTC
[ENA]
¡û
>W1511524730
JYFN01000017
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
31602
31677
+
Asp
GTC
[ENA]
¡û
>W121010772
AGJN01000045
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
22329
22404
+
Asp
GTC
[ENA]
¡û
>W121069975
AJWA01000079
Actinomycetota
Frankia sp. QA3 [AJWA]
192408
192333
-
Asp
GTC
[ENA]
¡û
>W1610163570
FAOZ01000004
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
53003
53078
+
Asp
GTC
[ENA]
¡û
>W1610507930
FLUV01000146
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
517
442
-
Asp
GTC
[ENA]
¡û
>W1610597134
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
57438
57363
-
Asp
GTC
[ENA]
¡û
>W1610648325
LJFZ01000012
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
82965
83040
+
Asp
GTC
[ENA]
¡û
>W1610657229
LJPA01000029
Actinomycetota
Frankia sp. ACN1ag [LJPA]
31575
31650
+
Asp
GTC
[ENA]
¡û
>W1710165237
FAOZ01000004
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
53003
53078
+
Asp
GTC
[ENA]
¡û
>W1710718293
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
57438
57363
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK