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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274010 (51 seq.)
>W1711769122
MVDP01000057
Betaproteobacteria
Snodgrassella alvi [MVDP]
14859
14782
-
Pro
TGG
[ENA]
¡û
>W1711931257
NAGW01000061
Betaproteobacteria
Snodgrassella alvi [NAGW]
17523
17600
+
Pro
TGG
[ENA]
¡û
>W1711931330
NAGX01000195
Betaproteobacteria
Snodgrassella alvi [NAGX]
15018
14941
-
Pro
TGG
[ENA]
¡û
>W1711931378
NAGY01000051
Betaproteobacteria
Snodgrassella alvi [NAGY]
14842
14765
-
Pro
TGG
[ENA]
¡û
>W1711931435
NAGZ01000118
Betaproteobacteria
Snodgrassella alvi [NAGZ]
17339
17416
+
Pro
TGG
[ENA]
¡û
>W1711931484
NAHA01000079
Betaproteobacteria
Snodgrassella alvi [NAHA]
49575
49652
+
Pro
TGG
[ENA]
¡û
>W1711931529
NAHB01000048
Betaproteobacteria
Snodgrassella alvi [NAHB]
14970
14893
-
Pro
TGG
[ENA]
¡û
>W1711931563
NAHC01000054
Betaproteobacteria
Snodgrassella alvi [NAHC]
4262
4185
-
Pro
TGG
[ENA]
¡û
>W1711931645
NAHD01000074
Betaproteobacteria
Snodgrassella alvi [NAHD]
49740
49817
+
Pro
TGG
[ENA]
¡û
>W1711931669
NAHE01000085
Betaproteobacteria
Snodgrassella alvi [NAHE]
17492
17569
+
Pro
TGG
[ENA]
¡û
>W1711931732
NAHF01000093
Betaproteobacteria
Snodgrassella alvi [NAHF]
17558
17635
+
Pro
TGG
[ENA]
¡û
>W1711931781
NAHG01000122
Betaproteobacteria
Snodgrassella alvi [NAHG]
17480
17557
+
Pro
TGG
[ENA]
¡û
>W1711931838
NAHH01000054
Betaproteobacteria
Snodgrassella alvi [NAHH]
70411
70488
+
Pro
TGG
[ENA]
¡û
>W1711931880
NAHI01000057
Betaproteobacteria
Snodgrassella alvi [NAHI]
23571
23648
+
Pro
TGG
[ENA]
¡û
>W1711931943
NAHJ01000055
Betaproteobacteria
Snodgrassella alvi [NAHJ]
66505
66582
+
Pro
TGG
[ENA]
¡û
>W1711931979
NAHK01000089
Betaproteobacteria
Snodgrassella alvi [NAHK]
4248
4171
-
Pro
TGG
[ENA]
¡û
>W1711932057
NAHL01000097
Betaproteobacteria
Snodgrassella alvi [NAHL]
22234
22311
+
Pro
TGG
[ENA]
¡û
>W1711932085
NAHM01000047
Betaproteobacteria
Snodgrassella alvi [NAHM]
16857
16934
+
Pro
TGG
[ENA]
¡û
>W1711932149
NAHN01000071
Betaproteobacteria
Snodgrassella alvi [NAHN]
14826
14749
-
Pro
TGG
[ENA]
¡û
>W1711932173
NAHO01000017
Betaproteobacteria
Snodgrassella alvi [NAHO]
22558
22635
+
Pro
TGG
[ENA]
¡û
>W1711932237
NAHP01000048
Betaproteobacteria
Snodgrassella alvi [NAHP]
16857
16934
+
Pro
TGG
[ENA]
¡û
>W1711932296
NAHQ01000086
Betaproteobacteria
Snodgrassella alvi [NAHQ]
17943
18020
+
Pro
TGG
[ENA]
¡û
>WENV181845493
OGVX01003085
[OGVX] freshwater metagenome; freshwater
1844
1767
-
Pro
TGG
[ENA]
¡û
>WENV181851643
OGWF01000262
[OGWF] freshwater metagenome; freshwater
3704
3627
-
Pro
TGG
[ENA]
¡û
>WENV182865927
OKRQ01006545
[OKRQ] freshwater metagenome; freshwater
327
404
+
Pro
TGG
[ENA]
¡û
>W1910696343
MEII01000020
Betaproteobacteria
Snodgrassella alvi wkB339 [MEII]
14896
14819
-
Pro
TGG
[ENA]
¡û
>W1910696386
MEIJ01000003
Betaproteobacteria
Snodgrassella alvi wkB332 [MEIJ]
20467
20544
+
Pro
TGG
[ENA]
¡û
>W1910696623
MEIN01000009
Betaproteobacteria
Snodgrassella alvi wkB9 [MEIN]
72280
72357
+
Pro
TGG
[ENA]
¡û
>W1910697172
MEIX01000021
Betaproteobacteria
Snodgrassella alvi MS1-3 [MEIX]
3470
3393
-
Pro
TGG
[ENA]
¡û
>W1911422712
NXEN01000007
Betaproteobacteria
Snodgrassella alvi E1 [NXEN]
14857
14780
-
Pro
TGG
[ENA]
¡û
>W1810603957
QGLS01000006
Betaproteobacteria
Snodgrassella alvi ESL0196 [QGLS]
66972
67049
+
Pro
TGG
[ENA]
¡û
>C151023817
CP007446
Betaproteobacteria
Snodgrassella alvi wkB2 [CP007446]
274876
274953
+
Pro
TGG
[Ensembl]
¡û
>W2010452881
JAAEDR010000006
Betaproteobacteria
Snodgrassella sp. ESL0304 [JAAEDR]
53409
53486
+
Pro
TGG
[ENA]
¡û
>W2010452934
JAAEDS010000008
Betaproteobacteria
Snodgrassella sp. ESL0324 [JAAEDS]
45844
45921
+
Pro
TGG
[ENA]
¡û
>W2010452985
JAAEDT010000009
Betaproteobacteria
Snodgrassella sp. ESL0323 [JAAEDT]
62835
62912
+
Pro
TGG
[ENA]
¡û
>W2010829768
MEII01000020
Betaproteobacteria
Snodgrassella alvi wkB339 [MEII]
14896
14819
-
Pro
TGG
[ENA]
¡û
>W2010829811
MEIJ01000003
Betaproteobacteria
Snodgrassella alvi wkB332 [MEIJ]
20467
20544
+
Pro
TGG
[ENA]
¡û
>W2010830048
MEIN01000009
Betaproteobacteria
Snodgrassella alvi wkB9 [MEIN]
72280
72357
+
Pro
TGG
[ENA]
¡û
>W2010830597
MEIX01000021
Betaproteobacteria
Snodgrassella alvi MS1-3 [MEIX]
3470
3393
-
Pro
TGG
[ENA]
¡û
>W2011143070
NXEN01000007
Betaproteobacteria
Snodgrassella alvi E1 [NXEN]
14857
14780
-
Pro
TGG
[ENA]
¡û
>W2110208575
JACFQX010000005
Betaproteobacteria
Snodgrassella sp. W8135 [JACFQX]
66738
66815
+
Pro
TGG
[ENA]
¡û
>W2110208625
JACFQY010000005
Betaproteobacteria
Snodgrassella sp. W8134 [JACFQY]
56916
56839
-
Pro
TGG
[ENA]
¡û
>W2110209425
JACFRP010000003
Betaproteobacteria
Snodgrassella sp. W8124 [JACFRP]
68385
68462
+
Pro
TGG
[ENA]
¡û
>W2110209474
JACFRQ010000003
Betaproteobacteria
Snodgrassella sp. W8132 [JACFRQ]
20154
20231
+
Pro
TGG
[ENA]
¡û
>W2110210136
JACFSG010000003
Betaproteobacteria
Snodgrassella sp. M0351 [JACFSG]
46325
46248
-
Pro
TGG
[ENA]
¡û
>W2110210186
JACFSH010000005
Betaproteobacteria
Snodgrassella sp. W6238H11 [JACFSH]
70516
70593
+
Pro
TGG
[ENA]
¡û
>W2110210238
JACFSI010000005
Betaproteobacteria
Snodgrassella sp. W6238H14 [JACFSI]
70528
70605
+
Pro
TGG
[ENA]
¡û
>W2110210419
JACFSM010000006
Betaproteobacteria
Snodgrassella sp. W8158 [JACFSM]
20341
20418
+
Pro
TGG
[ENA]
¡û
>C231300156
CP091515
Betaproteobacteria
Snodgrassella alvi wkB2 [CP091515]
627942
627865
-
Pro
TGG
-
¡û
>C241301345
CP132374
Betaproteobacteria
Snodgrassella alvi wkB339 [CP132374]
576858
576935
+
Pro
TGG
-
¡û
>C241301403
CP132375
Betaproteobacteria
Snodgrassella alvi wkB9 [CP132375]
613707
613784
+
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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