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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274019 (5 seq.)
>W1810199836
PNRA02000008
Actinomycetota
Streptomyces sp. SMS_SU21 [PNRA]
326447
326522
+
Leu
TAG
[ENA]
¡û
>W1810579807
QEQV01000005
Actinomycetota
Streptomyces sp. BSE7F [QEQV]
1582087
1582162
+
Leu
TAG
[ENA]
¡û
>W2010466403
JAAGMC010000331
Actinomycetota
Actinospica acidiphila SID14190 [JAAGMC]
19616
19541
-
Leu
TAG
[ENA]
¡û
>W2110220649
JACJDJ010000004
Actinomycetota
Streptomyces sp. I5 [JACJDJ]
2512470
2512545
+
Leu
TAG
[ENA]
¡û
>W2110220733
JACJDK010000005
Actinomycetota
Streptomyces sp. BSE7-9 [JACJDK]
4555930
4555855
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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