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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274129 (59 seq.)
>W1711091121
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
205
130
-
Ala
TGC
[ENA]
¡û
>W1711352347
MDDC01000054
Bacillota
Moorella thermoacetica [MDDC]
251
176
-
Ala
TGC
[ENA]
¡û
>W1711352422
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
30152
30077
-
Ala
TGC
[ENA]
¡û
>W1711352425
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
22716
22641
-
Ala
TGC
[ENA]
¡û
>W1711428565
MIHH01000082
Bacillota
Moorella thermoacetica [MIHH]
296
371
+
Ala
TGC
[ENA]
¡û
>W1711428618
MIIF01000057
Bacillota
Moorella thermoacetica [MIIF]
202
127
-
Ala
TGC
[ENA]
¡û
>C171055170
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
156580
156655
+
Ala
TGC
-
¡û
>C005896
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2112028
2111953
-
Ala
TGC
[Ensembl]
¡û
>C014159
CP000232
Bacillota
Moorella thermoacetica [CP000232]
149830
149905
+
Ala
TGC
[Ensembl]
¡û
>WENV180315523
OBKH01118117
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
167
242
+
Ala
TGC
[ENA]
¡û
>WENV180469896
OBYM01024665
[OBYM] human gut metagenome; faeces
837
762
-
Ala
TGC
[ENA]
¡û
>WENV180652374
OCVV010056617
[OCVV] gut metagenome; gut
199
124
-
Ala
TGC
[ENA]
¡û
>WENV180652376
OCVV010056617
[OCVV] gut metagenome; gut
199
124
-
Ala
TGC
[ENA]
¡û
>WENV180829226
ODKA01086629
[ODKA] human metagenome; G_DNA_Stool
120
195
+
Ala
TGC
[ENA]
¡û
>WENV180841301
ODKJ01112734
[ODKJ] human metagenome; G_DNA_Stool
135
60
-
Ala
TGC
[ENA]
¡û
>WENV181088405
OEBA01001354
[OEBA] human metagenome; G_DNA_Stool
1542
1467
-
Ala
TGC
[ENA]
¡û
>WENV181264008
OFFZ01070099
[OFFZ] mouse gut metagenome; faeces
544
469
-
Ala
TGC
[ENA]
¡û
>WENV181343688
OFMJ01006788
[OFMJ] human gut metagenome; human gut
2586
2511
-
Ala
TGC
[ENA]
¡û
>WENV181803744
OGSD01045844
[OGSD] human gut metagenome; faeces
160
235
+
Ala
TGC
[ENA]
¡û
>WENV181984730
OHAI01048608
[OHAI] human gut metagenome; faeces
46
121
+
Ala
TGC
[ENA]
¡û
>WENV182019119
OHBX01040051
[OHBX] human gut metagenome; feces
95
20
-
Ala
TGC
[ENA]
¡û
>WENV182315364
OHYB01020260
[OHYB] human gut metagenome; feces
755
680
-
Ala
TGC
[ENA]
¡û
>W141229825
BARR01000060
Bacillota
Moorella thermoacetica Y72 [BARR]
75
1
-
Ala
TGC
[ENA]
¡û
>WENV182331554
OHZI01008472
[OHZI] human gut metagenome; feces
572
647
+
Ala
TGC
[ENA]
¡û
>WENV182606532
OJJT01020962
[OJJT] metagenome; faeces
527
452
-
Ala
TGC
[ENA]
¡û
>WENV182628604
OJKQ01019452
[OJKQ] metagenome; faeces
789
714
-
Ala
TGC
[ENA]
¡û
>WENV182907383
OKTE01020902
[OKTE] human gut metagenome; feces
657
582
-
Ala
TGC
[ENA]
¡û
>WENV182943056
OKVH01019883
[OKVH] human gut metagenome; human gut
150
75
-
Ala
TGC
[ENA]
¡û
>WENV183154743
OLOR01011747
[OLOR] human gut metagenome; faeces
172
247
+
Ala
TGC
[ENA]
¡û
>WENV183199458
OLPV01069493
[OLPV] human gut metagenome; faeces
177
252
+
Ala
TGC
[ENA]
¡û
>WENV183273604
OLRX01017223
[OLRX] human gut metagenome; faeces
1783
1708
-
Ala
TGC
[ENA]
¡û
>WENV183286626
OLSE01026961
[OLSE] human gut metagenome; faeces
182
257
+
Ala
TGC
[ENA]
¡û
>WENV183296287
OLSL01026592
[OLSL] human gut metagenome; faeces
177
252
+
Ala
TGC
[ENA]
¡û
>WENV183336646
OLWH01027308
[OLWH] human gut metagenome; feces
151
226
+
Ala
TGC
[ENA]
¡û
>WENV183367845
OLXQ01062613
[OLXQ] human gut metagenome; feces
55
130
+
Ala
TGC
[ENA]
¡û
>WENV183466688
OMEC01005306
[OMEC] human gut metagenome; feces
2224
2149
-
Ala
TGC
[ENA]
¡û
>WENV183768681
PPYE01395314
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
148
223
+
Ala
TGC
[ENA]
¡û
>WENV170046352
CDYY01033344
[CDYY] gut metagenome; human stools
827
752
-
Ala
TGC
[ENA]
¡û
>WENV170644145
JMBV01046825
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
106
181
+
Ala
TGC
[ENA]
¡û
>WENV170660340
JXWT01077436
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
201
126
-
Ala
TGC
[ENA]
¡û
>WENV170676550
LDZS01001213
[LDZS] terrestrial metagenome; oil reservoir sample K3
75
150
+
Ala
TGC
[ENA]
¡û
>C191073416
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
156557
156632
+
Ala
TGC
-
¡û
>W09100963
AADT03000052
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
2202
2277
+
Ala
TGC
[ENA]
¡û
>W1910180149
BJKO01000004
Bacillota
Moorella sp. E306M [BJKO]
328
403
+
Ala
TGC
[ENA]
¡û
>C151094345
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
149481
149556
+
Ala
TGC
-
¡û
>C151094395
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
149480
149555
+
Ala
TGC
-
¡û
>W2010093408
BJKO01000004
Bacillota
Moorella sp. E306M [BJKO]
328
403
+
Ala
TGC
[ENA]
¡û
>W2011638888
SMNS01002308
Bacillota
Clostridia bacterium k32 [SMNS]
97
22
-
Ala
TGC
[ENA]
¡û
>W2012096654
VNHL01000001
Bacillota
Moorella thermoacetica ATCC 39073 [VNHL]
228730
228655
-
Ala
TGC
[ENA]
¡û
>C211023813
AP024619
Bacillota
Gelria sp. Kuro-4 [AP024619]
2015787
2015712
-
Ala
TGC
-
¡û
>C211023817
AP024619
Bacillota
Gelria sp. Kuro-4 [AP024619]
491877
491802
-
Ala
TGC
-
¡û
>C211116897
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
2742428
2742503
+
Ala
TGC
-
¡û
>C211116900
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
2750235
2750310
+
Ala
TGC
-
¡û
>C211116918
CP058559
Bacillota
Clostridiales bacterium LB2 [CP058559]
1760136
1760061
-
Ala
TGC
-
¡û
>C231005270
AP024620
Bacillota
Moorella sp. Hama-1 [AP024620]
180233
180308
+
Ala
TGC
-
¡û
>W1510100243
CELZ01000013
Bacillota
Moorella glycerini NMP [CELZ]
36103
36028
-
Ala
TGC
[ENA]
¡û
>W1511706138
LGTE01000071
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
239
164
-
Ala
TGC
[ENA]
¡û
>W1610924132
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
150016
149941
-
Ala
TGC
[ENA]
¡û
>W1610925320
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
205
130
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK