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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274154 (55 seq.)
>W1711422868
MIBN01000090
Campylobacterota
Sulfuricurvum sp. GWF2_44_89 [MIBN]
13167
13092
-
Val
TAC
[ENA]
¡û
>W1711422870
MIBN01000090
Campylobacterota
Sulfuricurvum sp. GWF2_44_89 [MIBN]
12969
12894
-
Val
TAC
[ENA]
¡û
>W1711422879
MIBU01000003
Campylobacterota
Sulfuricurvum sp. RIFOXYD12_FULL_44_77 [MIBU]
13606
13531
-
Val
TAC
[ENA]
¡û
>W1711422924
MIBV01000343
Campylobacterota
Sulfuricurvum sp. RIFOXYD2_FULL_44_160 [MIBV]
5285
5210
-
Val
TAC
[ENA]
¡û
>W1711422926
MIBV01000343
Campylobacterota
Sulfuricurvum sp. RIFOXYD2_FULL_44_160 [MIBV]
5087
5012
-
Val
TAC
[ENA]
¡û
>W1711422958
MICC01000002
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
5818
5893
+
Val
TAC
[ENA]
¡û
>W1711423040
MICF01000010
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
133236
133161
-
Val
TAC
[ENA]
¡û
>W1711423041
MICF01000010
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
133027
132952
-
Val
TAC
[ENA]
¡û
>W1711423070
MICH01000006
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
146797
146722
-
Val
TAC
[ENA]
¡û
>W1711423071
MICH01000006
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
146588
146513
-
Val
TAC
[ENA]
¡û
>W1711423102
MICI01000113
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
1247
1172
-
Val
TAC
[ENA]
¡û
>C025441
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
810608
810683
+
Val
TAC
[Ensembl]
¡û
>C025442
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
810817
810892
+
Val
TAC
[Ensembl]
¡û
>WENV180037121
FVAA010634018
[FVAA] soil metagenome; Soil
68
143
+
Val
TAC
[ENA]
¡û
>WENV180255932
OBEQ010768319
[OBEQ] groundwater metagenome; groundwater
2
77
+
Val
TAC
[ENA]
¡û
>WENV180255934
OBEQ010768349
[OBEQ] groundwater metagenome; groundwater
2
77
+
Val
TAC
[ENA]
¡û
>WENV180255936
OBEQ010768349
[OBEQ] groundwater metagenome; groundwater
198
273
+
Val
TAC
[ENA]
¡û
>WENV180272577
OBEQ012393591
[OBEQ] groundwater metagenome; groundwater
2593
2668
+
Val
TAC
[ENA]
¡û
>WENV183696415
ORMF012550850
[ORMF] groundwater metagenome; groundwater
90506
90431
-
Val
TAC
[ENA]
¡û
>WENV183696416
ORMF012550850
[ORMF] groundwater metagenome; groundwater
90295
90220
-
Val
TAC
[ENA]
¡û
>WENV183703115
PDVJ01003219
[PDVJ] alkali sediment metagenome; glacial lake sediment
194
269
+
Val
TAC
[ENA]
¡û
>WENV183703839
PDVJ01052109
[PDVJ] alkali sediment metagenome; glacial lake sediment
267
342
+
Val
TAC
[ENA]
¡û
>WENV170005863
AMQJ01003126
[AMQJ] sediment metagenome; subsurface aquifer sediment
169
94
-
Val
TAC
[ENA]
¡û
>WENV170005932
AMQJ01005074
[AMQJ] sediment metagenome; subsurface aquifer sediment
368
293
-
Val
TAC
[ENA]
¡û
>WENV170640697
JFJP01024013
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
41035
41110
+
Val
TAC
[ENA]
¡û
>WENV170640699
JFJP01024013
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
41336
41411
+
Val
TAC
[ENA]
¡û
>W09103221
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
2035007
2034932
-
Val
TAC
[ENA]
¡û
>W09103222
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
2034798
2034723
-
Val
TAC
[ENA]
¡û
>W141814485
JQGL01000041
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
41006
40931
-
Val
TAC
[ENA]
¡û
>W141814487
JQGL01000041
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
40809
40734
-
Val
TAC
[ENA]
¡û
>W1910744464
MIBP01000723
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
1581
1506
-
Val
TAC
[ENA]
¡û
>W1910744486
MIBQ01000494
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_02_43_6 [MIBQ]
2431
2506
+
Val
TAC
[ENA]
¡û
>W1910744524
MIBT01000015
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
44175
44100
-
Val
TAC
[ENA]
¡û
>W1910744590
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4294
4369
+
Val
TAC
[ENA]
¡û
>W1910744591
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4598
4673
+
Val
TAC
[ENA]
¡û
>W1910744623
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
8034
7959
-
Val
TAC
[ENA]
¡û
>W1910744624
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
7730
7655
-
Val
TAC
[ENA]
¡û
>W1910744666
MICB01000041
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
1636
1711
+
Val
TAC
[ENA]
¡û
>W1910744667
MICB01000041
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
1940
2015
+
Val
TAC
[ENA]
¡û
>W2010877861
MIBO01000298
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
5024
5098
+
Val
TAC
[ENA]
¡û
>W2010877896
MIBP01000723
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
1581
1506
-
Val
TAC
[ENA]
¡û
>W2010877918
MIBQ01000494
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_02_43_6 [MIBQ]
2431
2506
+
Val
TAC
[ENA]
¡û
>W2010877956
MIBT01000015
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
44175
44100
-
Val
TAC
[ENA]
¡û
>W2010878022
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4294
4369
+
Val
TAC
[ENA]
¡û
>W2010878023
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4598
4673
+
Val
TAC
[ENA]
¡û
>W2010878055
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
8034
7959
-
Val
TAC
[ENA]
¡û
>W2010878056
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
7730
7655
-
Val
TAC
[ENA]
¡û
>W2010878098
MICB01000041
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
1636
1711
+
Val
TAC
[ENA]
¡û
>W2010878099
MICB01000041
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
1940
2015
+
Val
TAC
[ENA]
¡û
>W2011617381
SLTI01000007
Campylobacterota
Sulfuricurvum sp. IAE1 [SLTI]
237836
237911
+
Val
TAC
[ENA]
¡û
>W1511327953
JQIT01000004
Campylobacterota
Sulfuricurvum sp. PC08-66 [JQIT]
157045
156970
-
Val
TAC
[ENA]
¡û
>W1511327954
JQIT01000004
Campylobacterota
Sulfuricurvum sp. PC08-66 [JQIT]
156841
156766
-
Val
TAC
[ENA]
¡û
>C11120693
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
775293
775218
-
Val
TAC
[Ensembl]
¡û
>C11120695
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
775097
775022
-
Val
TAC
[Ensembl]
¡û
>C161002990
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1654022
1654097
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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