This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274191 (44 seq.)
>W1710874835
LMNX01000002
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
1048738
1048662
-
Arg
TCT
[ENA]
¡û
>W1710875235
LMOF01000007
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
148117
148193
+
Arg
TCT
[ENA]
¡û
>W1710887804
LMZF01000014
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
40540
40464
-
Arg
TCT
[ENA]
¡û
>W1711213608
LXKM01000001
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
934881
934805
-
Arg
TCT
[ENA]
¡û
>W1711213743
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
680271
680347
+
Arg
TCT
[ENA]
¡û
>W1711213797
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
567939
567863
-
Arg
TCT
[ENA]
¡û
>W1711636778
MPVZ01000006
Alphaproteobacteria
Rhizobium sp. P44RR-XXIV [MPVZ]
173595
173671
+
Arg
TCT
[ENA]
¡û
>C171059065
CP017241
Alphaproteobacteria
Rhizobium etli 8C-3 [CP017241]
1818596
1818672
+
Arg
TCT
-
¡û
>W131174574
ARIO01000034
Alphaproteobacteria
Rhizobium sp. 2MFCol3.1 [ARIO]
137416
137492
+
Arg
TCT
[ENA]
¡û
>W131227332
AUFB01000016
Alphaproteobacteria
Rhizobium leucaenae USDA 9039 [AUFB]
182
106
-
Arg
TCT
[ENA]
¡û
>W141236101
BAYX01000014
Alphaproteobacteria
Rhizobium rhizogenes NBRC 13257 [BAYX]
160564
160488
-
Arg
TCT
[ENA]
¡û
>W141485680
JFZP01000013
Alphaproteobacteria
Rhizobium rhizogenes [JFZP]
1400040
1399964
-
Arg
TCT
[ENA]
¡û
>C181099256
CP024311
Alphaproteobacteria
Rhizobium sp. NXC24 [CP024311]
1814402
1814478
+
Arg
TCT
-
¡û
>C191093655
CP032684
Alphaproteobacteria
Rhizobium sp. CCGE531 [CP032684]
1892090
1892166
+
Arg
TCT
-
¡û
>C191093706
CP032689
Alphaproteobacteria
Rhizobium sp. CCGE532 [CP032689]
1747843
1747919
+
Arg
TCT
-
¡û
>C191093757
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
1956352
1956428
+
Arg
TCT
-
¡û
>W141816451
JQJW01000001
Alphaproteobacteria
Rhizobium rhizogenes [JQJW]
1768403
1768327
-
Arg
TCT
[ENA]
¡û
>W141816512
JQJX01000007
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
142979
142903
-
Arg
TCT
[ENA]
¡û
>W141817753
JQLA01000002
Alphaproteobacteria
Rhizobium sp. OK494 [JQLA]
3763
3839
+
Arg
TCT
[ENA]
¡û
>W141817824
JQLB01000004
Alphaproteobacteria
Rhizobium sp. YR060 [JQLB]
368
292
-
Arg
TCT
[ENA]
¡û
>C09100686
CP000628
Alphaproteobacteria
Rhizobium rhizogenes K84 [CP000628, CP000629]
1730991
1731067
+
Arg
TCT
[Ensembl]
¡û
>W1910441839
FWER01000016
Alphaproteobacteria
Rhizobium sullae [FWER]
137508
137584
+
Arg
TCT
[ENA]
¡û
>W1810403657
PYJN01000013
Alphaproteobacteria
Rhizobium sp. SEMIA4064 [PYJN]
470316
470392
+
Arg
TCT
[ENA]
¡û
>W1810694704
QLMF01000004
Alphaproteobacteria
Rhizobium etli R22G [QLMF]
51025
50949
-
Arg
TCT
[ENA]
¡û
>SRA1014736
SRR023845.288735
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
62
-
Arg
TCT
[SRA]
>W1511432718
JUGS01000008
Alphaproteobacteria
Rhizobium rhizogenes CF262 [JUGS]
1377763
1377839
+
Arg
TCT
[ENA]
¡û
>W1511433461
JUHF01000008
Alphaproteobacteria
Rhizobium rhizogenes CF263 [JUHF]
1491240
1491164
-
Arg
TCT
[ENA]
¡û
>W1511433484
JUHG01000011
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
159703
159779
+
Arg
TCT
[ENA]
¡û
>W1511433620
JUHJ01000002
Alphaproteobacteria
Rhizobium sp. YR528 [JUHJ]
56030
55954
-
Arg
TCT
[ENA]
¡û
>W1511433934
JUHP01000001
Alphaproteobacteria
Rhizobium rhizogenes YR530 [JUHP]
226708
226784
+
Arg
TCT
[ENA]
¡û
>W1511433980
JUHQ01000002
Alphaproteobacteria
Rhizobium tropici YR635 [JUHQ]
134840
134916
+
Arg
TCT
[ENA]
¡û
>W1511434145
JUHT01000014
Alphaproteobacteria
Rhizobium lusitanum YR374 [JUHT]
83102
83026
-
Arg
TCT
[ENA]
¡û
>W121068986
AJVM01000008
Alphaproteobacteria
Rhizobium sp. AP16 [AJVM]
147862
147938
+
Arg
TCT
[ENA]
¡û
>W1610514469
FMAF01000005
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
134744
134820
+
Arg
TCT
[ENA]
¡û
>W1610737181
LMNX01000002
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
1048738
1048662
-
Arg
TCT
[ENA]
¡û
>W1610737581
LMOF01000007
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
148117
148193
+
Arg
TCT
[ENA]
¡û
>W1610748504
LMZF01000014
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
40540
40464
-
Arg
TCT
[ENA]
¡û
>W1611000612
LXKM01000001
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
934881
934805
-
Arg
TCT
[ENA]
¡û
>W1611000747
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
680271
680347
+
Arg
TCT
[ENA]
¡û
>W1611000801
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
567939
567863
-
Arg
TCT
[ENA]
¡û
>W1710500159
FMAF01000005
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
134744
134820
+
Arg
TCT
[ENA]
¡û
>W1710505185
FMTM01000008
Alphaproteobacteria
Rhizobium mongolense loessense [FMTM]
149676
149600
-
Arg
TCT
[ENA]
¡û
>W1710540088
FNWM01000002
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
1032530
1032606
+
Arg
TCT
[ENA]
¡û
>W1710619433
JHUO01000230
Alphaproteobacteria
Rhizobium yanglingense [JHUO]
90278
90202
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK