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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274198 (24 seq.)
>W1710811744
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1563915
1563839
-
His
GTG
[ENA]
¡û
>W1710865883
LMHA01000002
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
363004
363080
+
His
GTG
[ENA]
¡û
>W1710866458
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603412
603336
-
His
GTG
[ENA]
¡û
>W1711073104
LSIF01000108
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
3389
3465
+
His
GTG
[ENA]
¡û
>W1711220360
LXQJ01000032
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
384
308
-
His
GTG
[ENA]
¡û
>W1711424164
MIDV01000135
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
25761
25685
-
His
GTG
[ENA]
¡û
>W1711424181
MIDW01000014
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
18935
19011
+
His
GTG
[ENA]
¡û
>WENV180694505
OCZS012373084
[OCZS] soil metagenome; soil
73
149
+
His
GTG
[ENA]
¢þ
>W141282836
JAJA01000018
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
32510
32586
+
His
GTG
[ENA]
¡û
>WENV170720152
LSQX01143189
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
40182
40258
+
His
GTG
[ENA]
¢þ
>C181080830
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
2499032
2499108
+
His
GTG
-
¡û
>C181081794
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2000269
2000345
+
His
GTG
-
¡û
>W141713912
JMTZ01000040
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
30117
30193
+
His
GTG
[ENA]
¡û
>W1511595000
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
226406
226482
+
His
GTG
[ENA]
¡û
>C161031544
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
2100752
2100828
+
His
GTG
[Ensembl]
¡û
>C161031592
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2006810
2006886
+
His
GTG
[Ensembl]
¡û
>C161031659
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3739781
3739705
-
His
GTG
[Ensembl]
¡û
>C161052104
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
3452629
3452553
-
His
GTG
-
¡û
>W1610675841
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1563915
1563839
-
His
GTG
[ENA]
¡û
>W1610728229
LMHA01000002
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
363004
363080
+
His
GTG
[ENA]
¡û
>W1610728804
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603412
603336
-
His
GTG
[ENA]
¡û
>W1610912409
LSIF01000108
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
3389
3465
+
His
GTG
[ENA]
¡û
>W1611004832
LXQJ01000032
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
384
308
-
His
GTG
[ENA]
¡û
>W1710527575
FNLD01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF125 [FNLD]
88092
88168
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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