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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274223 (13 seq.)
>WENV180078344
MPMB02099948
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
1720
1643
-
Val
TAC
[ENA]
¡û
>WENV183805418
PVBE011018182
[PVBE] marine metagenome; water
3998
4075
+
Val
TAC
[ENA]
¡û
>WENV170210484
CEPV01209320
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
304
227
-
Val
TAC
[ENA]
¡û
>WENV170396110
CEUC01182270
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
108
31
-
Val
TAC
[ENA]
¡û
>WENV170399071
CEUD01336996
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
203
280
+
Val
TAC
[ENA]
¡û
>WENV170536023
CEWP01139573
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1890
1813
-
Val
TAC
[ENA]
¡û
>WENV170571820
FLOH01000324
[FLOH] marine metagenome; water
116617
116694
+
Val
TAC
[ENA]
¡û
>WENV170619782
FUWD013021169
[FUWD] metagenome; unknown
5275
5198
-
Val
TAC
[ENA]
¡û
>WENV170627901
FUWD013239410
[FUWD] metagenome; unknown
5275
5198
-
Val
TAC
[ENA]
¡û
>SRA1032887
SRR035088.121941
454 Sequencing (SRP001809)
415
338
-
Val
TAC
[SRA]
>SRA1033839
SRR035088.371768
454 Sequencing (SRP001809)
324
247
-
Val
TAC
[SRA]
>SRA1033917
SRR035088.406686
454 Sequencing (SRP001809)
92
15
-
Val
TAC
[SRA]
>SRA1048932
SRR035094.290430
454 Sequencing (SRP001815)
232
155
-
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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