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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274224 (28 seq.)
>WENV180242351
OBDI01195907
[OBDI] metagenome; diffuse fluid
126
51
-
Pro
CGG
[ENA]
¡û
>WENV180297152
OBJA01012342
[OBJA] soil metagenome; sediment, water from around vicinity
2638
2713
+
Pro
CGG
[ENA]
¡û
>WENV181169967
OEIV010017207
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
478
555
+
Pro
CGG
[ENA]
¡û
>WENV181305169
OFIF01010505
[OFIF] marine metagenome; seawater
149
224
+
Pro
CGG
[ENA]
¡û
>WENV181310843
OFJA01009843
[OFJA] marine metagenome; seawater
190
115
-
Pro
CGG
[ENA]
¡û
>WENV181317432
OFJY01001056
[OFJY] marine metagenome; seawater
2204
2129
-
Pro
CGG
[ENA]
¡û
>WENV181318104
OFJZ01001240
[OFJZ] marine metagenome; seawater
162
237
+
Pro
CGG
[ENA]
¡û
>WENV181371455
OFQV01005985
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
110
33
-
Pro
CGG
[ENA]
¡û
>WENV181403258
OFUA01006918
[OFUA] marine metagenome; seawater
71
146
+
Pro
CGG
[ENA]
¡û
>WENV181403513
OFUB01001137
[OFUB] marine metagenome; seawater
2196
2121
-
Pro
CGG
[ENA]
¡û
>WENV181841168
OGVR01000070
[OGVR] freshwater metagenome; freshwater
188
113
-
Pro
CGG
[ENA]
¡û
>WENV170571555
FLOH01000197
[FLOH] marine metagenome; water
160054
159977
-
Pro
CGG
[ENA]
¡û
>WENV170606153
FUWD010624312
[FUWD] metagenome; unknown
198
121
-
Pro
CGG
[ENA]
¡û
>WENV170621372
FUWD013057141
[FUWD] metagenome; unknown
294
217
-
Pro
CGG
[ENA]
¡û
>WENV170629555
FUWD013273486
[FUWD] metagenome; unknown
294
217
-
Pro
CGG
[ENA]
¡û
>SRA1031339
SRR035087.414880
454 Sequencing (SRP001808)
257
180
-
Pro
CGG
[SRA]
>SRA1032891
SRR035088.123331
454 Sequencing (SRP001809)
182
105
-
Pro
CGG
[SRA]
>SRA1033097
SRR035088.172850
454 Sequencing (SRP001809)
145
222
+
Pro
CGG
[SRA]
>SRA1033115
SRR035088.177877
454 Sequencing (SRP001809)
312
389
+
Pro
CGG
[SRA]
>SRA1035892
SRR035089.398187
454 Sequencing (SRP001810)
203
126
-
Pro
CGG
[SRA]
>SRA1036098
SRR035089.445734
454 Sequencing (SRP001810)
119
42
-
Pro
CGG
[SRA]
>SRA1037532
SRR035090.148913
454 Sequencing (SRP001811)
392
469
+
Pro
CGG
[SRA]
>SRA1038998
SRR035090.406213
454 Sequencing (SRP001811)
199
276
+
Pro
CGG
[SRA]
>SRA1039623
SRR035090.531772
454 Sequencing (SRP001811)
197
274
+
Pro
CGG
[SRA]
>SRA1039838
SRR035090.580682
454 Sequencing (SRP001811)
3
80
+
Pro
CGG
[SRA]
>W2011536636
SCKN01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L19 [SCKN]
176486
176561
+
Pro
CGG
[ENA]
¡û
>W2011536669
SCKO01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
4266
4341
+
Pro
CGG
[ENA]
¡û
>W2011536683
SCKO01000010
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
38876
38951
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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