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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274438 (59 seq.)
>A171002469
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1562564
1562490
-
Tyr
GTA
-
¡û
>A171002634
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2432685
2432611
-
Tyr
GTA
-
¡û
>A171002709
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2413868
2413941
+
Tyr
GTA
-
¡û
>A171003730
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2401106
2401179
+
Tyr
GTA
-
¡û
>A171003967
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2444118
2444044
-
Tyr
GTA
-
¡û
>A171004169
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
715250
715324
+
Tyr
GTA
-
¡û
>A171005824
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1045747
1045673
-
Tyr
GTA
-
¡û
>A171007013
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
2766902
2766828
-
Tyr
GTA
-
¡û
>A171007238
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2163453
2163527
+
Tyr
GTA
-
¡û
>A171007280
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
2869578
2869652
+
Tyr
GTA
-
¡û
>WENV180318173
OBKM01000030
[OBKM] metagenome; water
5765
5839
+
Tyr
GTA
[ENA]
¢þ
>WENV180318220
OBKM01000110
[OBKM] metagenome; water
4437
4511
+
Tyr
GTA
[ENA]
¢þ
>WENV180318222
OBKM01000113
[OBKM] metagenome; water
21405
21331
-
Tyr
GTA
[ENA]
¢þ
>At0782
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1796729
1796656
-
Tyr
GTA
[Ensembl]
¡û
>At1705
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
2576422
2576495
+
Tyr
GTA
[Ensembl]
¡û
>WENV170679678
LFCJ01000125
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Tyr
GTA
[ENA]
¢þ
>WENV170680391
LFCJ01010311
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Tyr
GTA
[ENA]
¢þ
>WENV170681393
LFFM01000717
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11913
11837
-
Tyr
GTA
[ENA]
¢þ
>WENV170702059
LKMJ01000419
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
30969
30895
-
Tyr
GTA
[ENA]
¢þ
>WENV170702211
LKMJ01000862
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
24272
24198
-
Tyr
GTA
[ENA]
¢þ
>WENV170702256
LKMJ01001097
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
22143
22069
-
Tyr
GTA
[ENA]
¢þ
>WENV170703458
LKMJ01012119
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2065
2141
+
Tyr
GTA
[ENA]
¢þ
>WENV170703497
LKMJ01012631
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6123
6197
+
Tyr
GTA
[ENA]
¢þ
>W1910006877
BBMO01000002
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
1060045
1060119
+
Tyr
GTA
[ENA]
¡û
>W1910011016
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
1933406
1933480
+
Tyr
GTA
[ENA]
¡û
>W1910175113
BIXZ01000003
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
119029
119103
+
Tyr
GTA
[ENA]
¡û
>W1910226670
FMZP01000001
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
179257
179331
+
Tyr
GTA
[ENA]
¡û
>W1910228363
FNOF01000003
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
128657
128731
+
Tyr
GTA
[ENA]
¡û
>W1910229885
FOIC01000002
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
144770
144696
-
Tyr
GTA
[ENA]
¡û
>W1910230037
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1268447
1268372
-
Tyr
GTA
[ENA]
¡û
>W1910230257
FOKW01000010
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
93198
93272
+
Tyr
GTA
[ENA]
¡û
>W1910230801
FOZK01000002
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
687310
687383
+
Tyr
GTA
[ENA]
¡û
>W1910340450
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
515247
515321
+
Tyr
GTA
[ENA]
¡û
>W1910568561
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1421706
1421632
-
Tyr
GTA
[ENA]
¡û
>W1910583039
JXAO01000004
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
68945
68871
-
Tyr
GTA
[ENA]
¡û
>W1910617591
LIUF01000002
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
324920
324994
+
Tyr
GTA
[ENA]
¡û
>W1910646108
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
586066
586140
+
Tyr
GTA
[ENA]
¡û
>W1911493154
OBEJ01000002
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
451891
451964
+
Tyr
GTA
[ENA]
¡û
>W1911696821
QNGA01000003
Euryarchaeota
halophilic archaeon H22 [QNGA]
393759
393833
+
Tyr
GTA
[ENA]
¡û
>W1911709455
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
634911
634837
-
Tyr
GTA
[ENA]
¡û
>W1911709592
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
662076
662002
-
Tyr
GTA
[ENA]
¡û
>W1911709858
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
141548
141622
+
Tyr
GTA
[ENA]
¡û
>W1911770011
QXIK01000002
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
253489
253563
+
Tyr
GTA
[ENA]
¡û
>W1610003274
AFNT02000025
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
46885
46811
-
Tyr
GTA
[ENA]
¡û
>W1610004196
AGIR01000002
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
234050
233976
-
Tyr
GTA
[ENA]
¡û
>W1610012052
AOHZ01000075
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
96468
96542
+
Tyr
GTA
[ENA]
¡û
>W1610012611
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
400446
400520
+
Tyr
GTA
[ENA]
¡û
>W1610012651
AOIQ01000019
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
61282
61208
-
Tyr
GTA
[ENA]
¡û
>W1610012777
AOIT01000030
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
12449
12523
+
Tyr
GTA
[ENA]
¡û
>W1610014103
AOLQ01000004
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
128573
128647
+
Tyr
GTA
[ENA]
¡û
>W1610014168
AOLR01000005
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
128877
128803
-
Tyr
GTA
[ENA]
¡û
>W1610014216
AOLS01000038
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
103562
103636
+
Tyr
GTA
[ENA]
¡û
>W1610014265
AOLW01000010
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
140162
140235
+
Tyr
GTA
[ENA]
¡û
>W1610014338
AOLX01000025
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
79065
79139
+
Tyr
GTA
[ENA]
¡û
>W1610014374
AOLY01000007
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
169839
169913
+
Tyr
GTA
[ENA]
¡û
>W1610040555
BAFM01000013
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
85950
85876
-
Tyr
GTA
[ENA]
¡û
>W1610061919
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1764100
1764026
-
Tyr
GTA
[ENA]
¡û
>W1610061940
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1187924
1187998
+
Tyr
GTA
[ENA]
¡û
>W1610881043
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
643637
643711
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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