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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274722 (68 seq.)
>W1710796476
LJSC01000046
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
25516
25591
+
Ala
CGC
[ENA]
¡û
>W131224018
AUCM01000005
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
186202
186277
+
Ala
CGC
[ENA]
¡û
>W1711421740
MHZR01000253
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
942
1017
+
Ala
CGC
[ENA]
¡û
>W1711421769
MHZS01000146
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
5438
5363
-
Ala
CGC
[ENA]
¡û
>W1711506162
MKWD01000062
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
114492
114417
-
Ala
CGC
[ENA]
¡û
>W1711585662
MNZZ01000164
Alphaproteobacteria
Rhodobacteraceae bacterium CG2_30_10_405 [MNZZ]
1364
1439
+
Ala
CGC
[ENA]
¡û
>W1712104558
NIPU01000020
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
76504
76429
-
Ala
CGC
[ENA]
¡û
>W1712104595
NIPV01000047
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
24343
24268
-
Ala
CGC
[ENA]
¡û
>W1712104648
NIPW01000038
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
4014
3939
-
Ala
CGC
[ENA]
¡û
>W1712104670
NIPX01000004
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
43534
43609
+
Ala
CGC
[ENA]
¡û
>W1712104726
NIPY01000048
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
1846
1771
-
Ala
CGC
[ENA]
¡û
>WENV180030081
FTJL01133461
[FTJL] metagenome; soil
224
149
-
Ala
CGC
[ENA]
¡û
>WENV180343318
OBLK01003329
[OBLK] soil metagenome; Clay
973
898
-
Ala
CGC
[ENA]
¡û
>WENV180398866
OBQB01010439
[OBQB] marine metagenome; ENVO.00002150
307
382
+
Ala
CGC
[ENA]
¡û
>WENV181296140
OFHJ01010139
[OFHJ] soil metagenome; Clay
1335
1260
-
Ala
CGC
[ENA]
¡û
>W141275978
JADL01000002
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
332846
332921
+
Ala
CGC
[ENA]
¡û
>WENV183671412
ORJL011057001
[ORJL] groundwater metagenome; groundwater
2294
2219
-
Ala
CGC
[ENA]
¡û
>WENV183687814
ORMF011195264
[ORMF] groundwater metagenome; groundwater
13
88
+
Ala
CGC
[ENA]
¡û
>WENV170010248
APMI01011435
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9082
9007
-
Ala
CGC
[ENA]
¡û
>WENV170566569
FKKE01049778
[FKKE] freshwater metagenome; freshwater
871
946
+
Ala
CGC
[ENA]
¡û
>WENV170710806
LNFM01002697
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16050
15975
-
Ala
CGC
[ENA]
¡û
>WENV170711091
LNFM01003506
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20799
20874
+
Ala
CGC
[ENA]
¡û
>W141461726
JFGS01000022
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
24353
24278
-
Ala
CGC
[ENA]
¡û
>WENV170892653
MDTD01040869
[MDTD] marine metagenome; seawater
42110
42035
-
Ala
CGC
[ENA]
¡û
>WENV170973373
MTKY01033798
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
901
826
-
Ala
CGC
[ENA]
¡û
>C181169782
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2821172
2821097
-
Ala
CGC
-
¡û
>W141523469
JGYG01000003
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
424103
424028
-
Ala
CGC
[ENA]
¡û
>C191123083
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
1516402
1516327
-
Ala
CGC
-
¡û
>C191144254
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
2307781
2307706
-
Ala
CGC
-
¡û
>W1910549839
FZQA01000006
Alphaproteobacteria
Amphiplicatus metriothermophilus CGMCC 1.12710 [FZQA]
29562
29487
-
Ala
CGC
[ENA]
¡û
>W1911495022
OBMN01000002
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
402585
402510
-
Ala
CGC
[ENA]
¡û
>W1911705880
QORU01000005
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
195313
195238
-
Ala
CGC
[ENA]
¡û
>W1911787295
QXXQ01000004
Alphaproteobacteria
Gemmobacter sp. YJ-T1-11 [QXXQ]
148738
148813
+
Ala
CGC
[ENA]
¡û
>W1810174035
PJON01000005
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
58944
59019
+
Ala
CGC
[ENA]
¡û
>W1810351387
PVEP01000014
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
20804
20729
-
Ala
CGC
[ENA]
¡û
>W1810444996
PZKF01000016
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
51822
51747
-
Ala
CGC
[ENA]
¡û
>W1810504100
QBKP01000015
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
116893
116968
+
Ala
CGC
[ENA]
¡û
>W1810707380
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
253161
253086
-
Ala
CGC
[ENA]
¡û
>SRA1030116
SRR035087.229905
454 Sequencing (SRP001808)
391
319
-
Ala
CGC
[SRA]
>W2010431600
FZQA01000006
Alphaproteobacteria
Amphiplicatus metriothermophilus CGMCC 1.12710 [FZQA]
29562
29487
-
Ala
CGC
[ENA]
¡û
>W2010439016
JAAATW010000002
Alphaproteobacteria
Rhodobacter sp. CCP-1 [JAAATW]
348301
348376
+
Ala
CGC
[ENA]
¡û
>W2010732283
JACIJT010000006
Alphaproteobacteria
Amphiplicatus metriothermophilus DSM 105738 [JACIJT]
29562
29487
-
Ala
CGC
[ENA]
¡û
>W2011155926
OBMN01000002
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
402585
402510
-
Ala
CGC
[ENA]
¡û
>W2011338646
QXXQ01000004
Alphaproteobacteria
Gemmobacter sp. YJ-T1-11 [QXXQ]
148738
148813
+
Ala
CGC
[ENA]
¡û
>W2011440323
RJRZ01000001
Alphaproteobacteria
Defluviimonas sp. XJ4 [RJRZ]
278946
278871
-
Ala
CGC
[ENA]
¡û
>W2011541152
SCPA01000005
Alphaproteobacteria
Rhizobiales bacterium X1A [SCPA]
279940
280015
+
Ala
CGC
[ENA]
¡û
>W2011650801
SNYP01000005
Alphaproteobacteria
Rhodobacter veldkampii DSM 11550 [SNYP]
23108
23183
+
Ala
CGC
[ENA]
¡û
>W2012071414
VKKX01000051
Alphaproteobacteria
Gemmobacter sp. N8 [VKKX]
184317
184242
-
Ala
CGC
[ENA]
¡û
>W2012082598
VLLH01000015
Alphaproteobacteria
Gemmobacter caeni CGMCC 1.7745 [VLLH]
1877
1802
-
Ala
CGC
[ENA]
¡û
>W2012099161
VOAK01000020
Alphaproteobacteria
Gemmobacter aquaticus A1-9 [VOAK]
118216
118291
+
Ala
CGC
[ENA]
¡û
>W2012239935
WCHR01000012
Alphaproteobacteria
Gemmobacter sp. HB-1 [WCHR]
145409
145484
+
Ala
CGC
[ENA]
¡û
>W2012357829
WKKA01000001
Alphaproteobacteria
Paracoccus sp. S-4012 [WKKA]
187890
187965
+
Ala
CGC
[ENA]
¡û
>W2110021200
BMEH01000009
Alphaproteobacteria
Gemmobacter megaterium CGMCC 1.11024 [BMEH]
6961
6886
-
Ala
CGC
[ENA]
¡û
>W2110030548
BMLP01000002
Alphaproteobacteria
Gemmobacter aquaticus CGMCC 1.7029 [BMLP]
300385
300310
-
Ala
CGC
[ENA]
¡û
>W2110049051
BMYI01000006
Alphaproteobacteria
Gemmobacter nanjingensis KCTC 23298 [BMYI]
108320
108245
-
Ala
CGC
[ENA]
¡û
>W2110049088
BMYJ01000002
Alphaproteobacteria
Gemmobacter tilapiae KCTC 23310 [BMYJ]
241186
241261
+
Ala
CGC
[ENA]
¡û
>W2110049424
BMYQ01000003
Alphaproteobacteria
Gemmobacter lanyuensis KCTC 23714 [BMYQ]
147365
147440
+
Ala
CGC
[ENA]
¡û
>W2110453700
JAESVP010000012
Alphaproteobacteria
Tabrizicola sp. KVB23 [JAESVP]
35858
35783
-
Ala
CGC
[ENA]
¡û
>W2110650750
JAHVAI010000012
Alphaproteobacteria
Sinirhodobacter sp. B57 [JAHVAI]
10194
10119
-
Ala
CGC
[ENA]
¡û
>W2110668832
JAICBZ010000017
Alphaproteobacteria
Xinfangfangia sp. Clo-40 [JAICBZ]
28286
28361
+
Ala
CGC
[ENA]
¡û
>C231565122
CP115170
Alphaproteobacteria
Sinirhodobacter sp. HNIBRBA609 [CP115170]
656148
656223
+
Ala
CGC
-
¡û
>C241135334
CP049258
Alphaproteobacteria
Nordella sp. HKS 07 [CP049258]
2166933
2166858
-
Ala
CGC
-
¡û
>C241328028
CP136571
Alphaproteobacteria
Fuscovulum sp. [CP136571]
3590178
3590103
-
Ala
CGC
-
¡û
>C161043370
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2890853
2890778
-
Ala
CGC
[Ensembl]
¡û
>W1610660433
LJSC01000046
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
25516
25591
+
Ala
CGC
[ENA]
¡û
>W1710546399
FOCE01000007
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
993
918
-
Ala
CGC
[ENA]
¡û
>W1710599128
FTOM01000002
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
410681
410756
+
Ala
CGC
[ENA]
¡û
>W1710599508
FTOT01000009
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
83308
83383
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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