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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27479 (55 seq.)
>W1710852858
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
127547
127636
+
Ser
CGA
[ENA]
¡û
>W1710852940
LLWE01000019
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
60250
60161
-
Ser
CGA
[ENA]
¡û
>W1710859326
LMCB01000015
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
113243
113154
-
Ser
CGA
[ENA]
¡û
>W1711054692
LRUA01000003
Alphaproteobacteria
Kordiimonas lacus [LRUA]
403720
403631
-
Ser
CGA
[ENA]
¡û
>W1711054744
LRUB01000013
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
80022
80111
+
Ser
CGA
[ENA]
¡û
>W1711257934
LYUD01000045
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17036
16947
-
Ser
CGA
[ENA]
¡û
>C171036176
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
1568287
1568198
-
Ser
CGA
-
¡û
>C171036216
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
1540705
1540794
+
Ser
CGA
-
¡û
>C171120272
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
2085392
2085481
+
Ser
CGA
-
¡û
>C171120330
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
2114224
2114313
+
Ser
CGA
-
¡û
>C171126428
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
2206451
2206540
+
Ser
CGA
-
¡û
>WENV180374150
OBOJ01100614
[OBOJ] marine metagenome; seawater
96
7
-
Ser
CGA
[ENA]
¢þ
>WENV180587204
OCON01084617
[OCON] marine metagenome; seawater
158
69
-
Ser
CGA
[ENA]
¢þ
>WENV170014543
AYRH01002941
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
763
674
-
Ser
CGA
[ENA]
¢þ
>WENV170768689
LXNH01027036
[LXNH] seawater metagenome; marine seawater
1964
2053
+
Ser
CGA
[ENA]
¢þ
>WENV170769795
LXNH01070524
[LXNH] seawater metagenome; marine seawater
236
325
+
Ser
CGA
[ENA]
¢þ
>WENV170962359
MRWF01013436
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
65036
65125
+
Ser
CGA
[ENA]
¢þ
>WENV170962536
MRWF01019435
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
358852
358941
+
Ser
CGA
[ENA]
¢þ
>WENV170963131
MRWG01000017
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
117572
117483
-
Ser
CGA
[ENA]
¢þ
>WENV170964588
MRWG01021303
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
503
414
-
Ser
CGA
[ENA]
¢þ
>W1910007928
BDER01000047
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
1390
1301
-
Ser
CGA
[ENA]
¡û
>W1910007968
BDES01000049
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
164646
164557
-
Ser
CGA
[ENA]
¡û
>W1910008031
BDET01000062
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
908
819
-
Ser
CGA
[ENA]
¡û
>W1910008081
BDEU01000066
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
7634
7545
-
Ser
CGA
[ENA]
¡û
>W1910008132
BDEV01000072
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
7310
7221
-
Ser
CGA
[ENA]
¡û
>W1910008190
BDEW01000065
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
2013
1924
-
Ser
CGA
[ENA]
¡û
>W1910008240
BDEX01000069
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
7532
7443
-
Ser
CGA
[ENA]
¡û
>W1910008346
BDEZ01000038
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
52117
52028
-
Ser
CGA
[ENA]
¡û
>C141012393
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
808921
808832
-
Ser
CGA
[Ensembl]
¡û
>W1910657442
MAPU01000005
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
151910
151999
+
Ser
CGA
[ENA]
¡û
>W1910753202
MKHC01000002
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
131085
131174
+
Ser
CGA
[ENA]
¡û
>C10100679
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
1953864
1953775
-
Ser
CGA
[Ensembl]
¡û
>C10100733
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2046118
2046029
-
Ser
CGA
[Ensembl]
¡û
>C10100790
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2048758
2048669
-
Ser
CGA
[Ensembl]
¡û
>C10100847
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2046100
2046011
-
Ser
CGA
[Ensembl]
¡û
>C10100904
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2046095
2046006
-
Ser
CGA
[Ensembl]
¡û
>C10100961
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
2048738
2048649
-
Ser
CGA
[Ensembl]
¡û
>C10101018
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2048780
2048691
-
Ser
CGA
[Ensembl]
¡û
>C10101075
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2046113
2046024
-
Ser
CGA
[Ensembl]
¡û
>WENV043978
AACY022377051
Marine microbial communities from Global Ocean Sampling (GOS)
551
642
+
Ser
CGA
[ENA]
>C161001917
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2099834
2099745
-
Ser
CGA
-
¡û
>W1610042584
BAXV01000005
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
129592
129503
-
Ser
CGA
[ENA]
¡û
>W121122990
BACG01000002
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
897
808
-
Ser
CGA
[ENA]
¡û
>W121126864
CADO01000016
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
919
830
-
Ser
CGA
[ENA]
¡û
>W121126918
CADQ01000034
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
4466
4377
-
Ser
CGA
[ENA]
¡û
>W1610715997
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
127547
127636
+
Ser
CGA
[ENA]
¡û
>W1610716079
LLWE01000019
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
60250
60161
-
Ser
CGA
[ENA]
¡û
>W1610721672
LMCB01000015
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
113243
113154
-
Ser
CGA
[ENA]
¡û
>W1610895738
LRUA01000003
Alphaproteobacteria
Kordiimonas lacus [LRUA]
403720
403631
-
Ser
CGA
[ENA]
¡û
>W1610895790
LRUB01000013
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
80022
80111
+
Ser
CGA
[ENA]
¡û
>W1611020406
LYUD01000045
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17036
16947
-
Ser
CGA
[ENA]
¡û
>W1710039678
BAXV01000005
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
129592
129503
-
Ser
CGA
[ENA]
¡û
>W1710513774
FNAK01000004
Alphaproteobacteria
Kordiimonas lacus [FNAK]
323751
323840
+
Ser
CGA
[ENA]
¡û
>W1710527546
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
2641387
2641298
-
Ser
CGA
[ENA]
¡û
>W1710550675
FOFM01000002
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
642679
642768
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK