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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274917 (14 seq.)
>W1711797286
MWRZ01000006
Bacteroidota
Zobellia sp. OII3 galactanivorans [MWRZ]
39897
39974
+
Val
GAC
[ENA]
¡û
>WENV170249982
CEQS01058134
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
274
349
+
Val
GAC
[ENA]
¡û
>C151098512
FP476056
Bacteroidota
Zobellia galactanivorans DsiJT [FP476056]
1069768
1069691
-
Val
GAC
[Ensembl]
¡û
>W2012329272
WHOT01000002
Bacteroidota
Flagellimonas sp. HSM57 [WHOT]
25077
25152
+
Val
GAC
[ENA]
¡û
>W2110259321
JACSOI010000007
Bacteroidota
Zobellia russellii KMM 3677 [JACSOI]
29264
29339
+
Val
GAC
[ENA]
¡û
>W2110309403
JADDXS010000005
Bacteroidota
Zobellia roscoffensis Asnod2-B02-B [JADDXS]
2351493
2351568
+
Val
GAC
[ENA]
¡û
>W2110309440
JADDXT010000002
Bacteroidota
Zobellia roscoffensis Asnod1-F08 [JADDXT]
2414296
2414371
+
Val
GAC
[ENA]
¡û
>W2110592926
JAHCMU010000004
Bacteroidota
Flagellimonas sp. 389 [JAHCMU]
24094
24169
+
Val
GAC
[ENA]
¡û
>W2110611996
JAHKPY010000015
Bacteroidota
Zobellia uliginosa C3R17 [JAHKPY]
185892
185817
-
Val
GAC
[ENA]
¡û
>W2110612382
JAHKQG010000002
Bacteroidota
Zobellia sp. B3R18 [JAHKQG]
190956
190881
-
Val
GAC
[ENA]
¡û
>W2110612914
JAHKQS010000040
Bacteroidota
Zobellia galactanivorans A2M03 [JAHKQS]
279119
279044
-
Val
GAC
[ENA]
¡û
>C231268391
CP090004
Bacteroidota
Flagellimonas sp. HMM57 [CP090004]
2618769
2618844
+
Val
GAC
-
¡û
>C231625520
CP119758
Bacteroidota
Zobellia sp. LLG6346-3.1 [CP119758]
2971090
2971165
+
Val
GAC
-
¡û
>W1710598567
FTOB01000015
Bacteroidota
Zobellia uliginosa [FTOB]
2183
2260
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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