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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275135 (15 seq.)
>W1711224151
LXTV01000002
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
12051
11974
-
Pro
GGG
[ENA]
¡û
>WENV180283003
OBIC01060531
[OBIC] beach sand metagenome; beach sand
154
231
+
Pro
GGG
[ENA]
¡û
>W141066865
ARYJ01000011
Alphaproteobacteria
Hyphomonas jannaschiana VP2 [ARYJ]
70890
70967
+
Pro
GGG
[ENA]
¡û
>W141136052
AWFD01000002
Alphaproteobacteria
Hyphomonas sp. CY54-11-8 [AWFD]
34812
34735
-
Pro
GGG
[ENA]
¡û
>WENV170779531
LZQP01000391
[LZQP] oil field metagenome; sample BH-FW-16 from oil reservoir
128
205
+
Pro
GGG
[ENA]
¡û
>WENV170821109
MDSY01016631
[MDSY] marine metagenome; seawater
30
107
+
Pro
GGG
[ENA]
¡û
>WENV170898528
MDTD01127486
[MDTD] marine metagenome; seawater
5036
5113
+
Pro
GGG
[ENA]
¡û
>WENV170922110
MDTG01025785
[MDTG] marine metagenome; seawater
29271
29194
-
Pro
GGG
[ENA]
¡û
>WENV170922669
MDTG01035133
[MDTG] marine metagenome; seawater
57
134
+
Pro
GGG
[ENA]
¡û
>W1910004710
AWFE01000058
Alphaproteobacteria
Hyphomonas sp. GM-8P [AWFE]
77767
77844
+
Pro
GGG
[ENA]
¡û
>W2010073143
AWFE01000058
Alphaproteobacteria
Hyphomonas sp. GM-8P [AWFE]
77767
77844
+
Pro
GGG
[ENA]
¡û
>W2011532028
SBJL01000001
Alphaproteobacteria
Alphaproteobacteria bacterium SYSU XM001 [SBJL]
822664
822741
+
Pro
GGG
[ENA]
¡û
>C231366139
CP096134
Alphaproteobacteria
Hyphomonadaceae bacterium JAD_PAG50586_4 [CP096134]
1898358
1898281
-
Pro
GGG
-
¡û
>C161053881
CP013244
Alphaproteobacteria
Candidatus Viadribacter manganicus A272 [CP013244]
203782
203859
+
Pro
GGG
[Ensembl]
¡û
>W1611008522
LXTV01000002
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
12051
11974
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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