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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275155 (14 seq.)
>W1711191190
LWSK01000057
Planctomycetota
Rubripirellula obstinata [LWSK]
22438
22363
-
Glu
TTC
[ENA]
¡û
>W131066060
ANOG01000943
Planctomycetota
Rhodopirellula maiorica SM1 [ANOG]
2637
2562
-
Glu
TTC
[ENA]
¡û
>W131066123
ANOH01000465
Planctomycetota
Rhodopirellula sallentina SM41 [ANOH]
10377
10452
+
Glu
TTC
[ENA]
¡û
>W131066317
ANOQ01000050
Planctomycetota
Rhodopirellula sp. SWK7 [ANOQ]
82798
82873
+
Glu
TTC
[ENA]
¡û
>C016620
BX119912
Planctomycetota
Rhodopirellula baltica [BX119912]
6200329
6200255
-
Glu
TTC
[Ensembl]
¡û
>WENV182553809
OJCR01034285
[OJCR] seawater metagenome; Sea water
408
483
+
Glu
TTC
[ENA]
¡û
>W2010717083
JACHXU010000002
Planctomycetota
Rhodopirellula rubra CECT 8075 [JACHXU]
270900
270825
-
Glu
TTC
[ENA]
¡û
>W2011610227
SJPI01000002
Planctomycetota
Planctomycetes bacterium Pla22 [SJPI]
1121753
1121678
-
Glu
TTC
[ENA]
¡û
>W2011610287
SJPJ01000001
Planctomycetota
Planctomycetes bacterium CA13 [SJPJ]
2425253
2425178
-
Glu
TTC
[ENA]
¡û
>W2011610448
SJPM01000014
Planctomycetota
Planctomycetes bacterium Pla100 [SJPM]
151917
151842
-
Glu
TTC
[ENA]
¡û
>W2011611019
SJPW01000009
Planctomycetota
Planctomycetes bacterium Poly51 [SJPW]
10236
10311
+
Glu
TTC
[ENA]
¡û
>W2012124777
VRLW01000001
Planctomycetota
Rubripirellula obstinata LF1 [VRLW]
716819
716744
-
Glu
TTC
[ENA]
¡û
>C201065828
CP036526
Planctomycetota
Planctomycetes bacterium K23_9 [CP036526]
3666266
3666341
+
Glu
TTC
-
¡û
>W1610992793
LWSK01000057
Planctomycetota
Rubripirellula obstinata [LWSK]
22438
22363
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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