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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275165 (10 seq.)
>W1711315305
MAVV01000007
Nitrospirota
Thermodesulfovibrio sp. N1 [MAVV]
29637
29561
-
Pro
GGG
[ENA]
¡û
>W131231875
AUIU01000014
Nitrospirota
Thermodesulfovibrio thiophilus DSM 17215 [AUIU]
218403
218327
-
Pro
GGG
[ENA]
¡û
>WENV181409536
OGCI01000264
[OGCI] hot springs metagenome; Hot spring water
63295
63219
-
Pro
GGG
[ENA]
¡û
>W141169975
AXWU01000020
Nitrospirota
Thermodesulfovibrio islandicus DSM 12570 [AXWU]
157221
157297
+
Pro
GGG
[ENA]
¡û
>W1910180271
BJKS01000003
Nitrospirota
Thermodesulfovibrio sp. Kuro-1 [BJKS]
247427
247351
-
Pro
GGG
[ENA]
¡û
>C09110755
CP001147
Nitrospirota
Thermodesulfovibrio yellowstonii DSM 11347 [CP001147]
1201588
1201512
-
Pro
GGG
[Ensembl]
¡û
>W2010093569
BJKS01000003
Nitrospirota
Thermodesulfovibrio sp. Kuro-1 [BJKS]
247427
247351
-
Pro
GGG
[ENA]
¡û
>W2310021461
BSDX01000001
Nitrospirota
Thermodesulfovibrio islandicus TSL-P1 [BSDX]
1057298
1057374
+
Pro
GGG
[ENA]
¡û
>W1610062464
BCNO01000001
Nitrospirota
Thermodesulfovibrio aggregans [BCNO]
1127603
1127679
+
Pro
GGG
[ENA]
¡û
>W1710060005
BCNO01000001
Nitrospirota
Thermodesulfovibrio aggregans [BCNO]
1127603
1127679
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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