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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275180 (6 seq.)
>W1711502741
MKSZ01000032
Bacteroidota
Bacteroidales bacterium 36-12 [MKSZ]
26967
27042
+
Met
CAT
[ENA]
¡û
>WENV182103955
OHHZ01009735
[OHHZ] human gut metagenome; feces
352
277
-
Ile2
CAT
[ENA]
¡û
>WENV182269722
OHUD01007358
[OHUD] human gut metagenome; feces
31
106
+
Ile2
CAT
[ENA]
¡û
>WENV183645785
OQVQ01027230
[OQVQ] human gut metagenome; human gut
622
697
+
Ile2
CAT
[ENA]
¡û
>WENV183719445
PDWJ01014279
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3918
3993
+
Ile2
CAT
[ENA]
¡û
>W2011308153
QVMH01000064
Bacteroidota
Paludibacter sp. 221 [QVMH]
3529
3604
+
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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