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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275262 (79 seq.)
>W1710787522
LJJR01000006
Deinococcota
Thermus scotoductus [LJJR]
29497
29421
-
Pro
CGG
[ENA]
¡û
>C171047214
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1993590
1993666
+
Pro
CGG
-
¡û
>W131155630
AQOS01000051
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
2884
2808
-
Pro
CGG
[ENA]
¡û
>W131160745
AQWU01000073
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
17750
17826
+
Pro
CGG
[ENA]
¡û
>W131167516
ARDI01000006
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
12535
12611
+
Pro
CGG
[ENA]
¡û
>W131177924
ARLD01000088
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
61151
61227
+
Pro
CGG
[ENA]
¡û
>W131218083
ATXJ01000002
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
125267
125343
+
Pro
CGG
[ENA]
¡û
>W131231939
AUIW01000001
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
169994
169918
-
Pro
CGG
[ENA]
¡û
>C025877
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
544999
545075
+
Pro
CGG
[Ensembl]
¡û
>C025931
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
878418
878494
+
Pro
CGG
[Ensembl]
¡û
>WENV180014079
FPIC01045537
[FPIC] soil metagenome; Soil
77
1
-
Pro
CGG
[ENA]
¢þ
>W141080530
ATNI01000116
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
43457
43381
-
Pro
CGG
[ENA]
¡û
>WENV181404596
OGCA01021040
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
528
452
-
Pro
CGG
[ENA]
¢þ
>WENV181404648
OGCB01000015
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
52315
52391
+
Pro
CGG
[ENA]
¢þ
>WENV181405336
OGCE01000003
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
42649
42725
+
Pro
CGG
[ENA]
¢þ
>WENV181408097
OGCH01000549
[OGCH] hot springs metagenome; hot springs
1080
1004
-
Pro
CGG
[ENA]
¢þ
>C181003597
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
364031
363955
-
Pro
CGG
-
¡û
>C191159694
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
697584
697508
-
Pro
CGG
-
¡û
>C191190033
LR027517
Deinococcota
Thermus thermophilus [LR027517]
746484
746408
-
Pro
CGG
-
¡û
>W141818275
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
663986
663910
-
Pro
CGG
[ENA]
¡û
>W141818291
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1558890
1558966
+
Pro
CGG
[ENA]
¡û
>W141820375
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1097292
1097216
-
Pro
CGG
[ENA]
¡û
>W141820773
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
740166
740090
-
Pro
CGG
[ENA]
¡û
>W1911578794
PELL01000126
Deinococcota
Thermus scotoductus 39_S39 [PELL]
706
630
-
Pro
CGG
[ENA]
¡û
>W1911578842
PELM01000141
Deinococcota
Thermus scotoductus 38_S38 [PELM]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911578893
PELN01000127
Deinococcota
Thermus scotoductus 37_S37 [PELN]
710
634
-
Pro
CGG
[ENA]
¡û
>W1911578939
PELO01000123
Deinococcota
Thermus scotoductus 35_S35 [PELO]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911578980
PELP01000161
Deinococcota
Thermus scotoductus 34_S34 [PELP]
710
634
-
Pro
CGG
[ENA]
¡û
>W1911579037
PELQ01000120
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
710
634
-
Pro
CGG
[ENA]
¡û
>W1911579083
PELR01000121
Deinococcota
Thermus scotoductus 32_S32 [PELR]
719
643
-
Pro
CGG
[ENA]
¡û
>W1911579126
PELS01000120
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1727
1803
+
Pro
CGG
[ENA]
¡û
>W1911579187
PELT01000146
Deinococcota
Thermus scotoductus 30_S30 [PELT]
706
630
-
Pro
CGG
[ENA]
¡û
>W1911579232
PELU01000163
Deinococcota
Thermus scotoductus 29_S29 [PELU]
1700
1776
+
Pro
CGG
[ENA]
¡û
>W1911579274
PELV01000179
Deinococcota
Thermus scotoductus 28_S28 [PELV]
671
595
-
Pro
CGG
[ENA]
¡û
>W1911579323
PELW01000147
Deinococcota
Thermus scotoductus 27_S27 [PELW]
706
630
-
Pro
CGG
[ENA]
¡û
>W1911579376
PELX01000135
Deinococcota
Thermus scotoductus 26_S26 [PELX]
1726
1802
+
Pro
CGG
[ENA]
¡û
>W1911579428
PELY01000148
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1726
1802
+
Pro
CGG
[ENA]
¡û
>W1911579472
PELZ01000212
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
712
636
-
Pro
CGG
[ENA]
¡û
>W1911579505
PEMA01000124
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911579559
PEMB01000143
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
1721
1797
+
Pro
CGG
[ENA]
¡û
>W1911579612
PEMC01000159
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
712
636
-
Pro
CGG
[ENA]
¡û
>W1911579660
PEMD01000149
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
1027
1103
+
Pro
CGG
[ENA]
¡û
>W1911579699
PEME01000113
Deinococcota
Thermus scotoductus 19_S19 [PEME]
1723
1799
+
Pro
CGG
[ENA]
¡û
>W1911579769
PEMF01000376
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
700
624
-
Pro
CGG
[ENA]
¡û
>W1911579798
PEMG01000145
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
1910
1986
+
Pro
CGG
[ENA]
¡û
>W1911579849
PEMH01000167
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
909
833
-
Pro
CGG
[ENA]
¡û
>W1911579895
PEMI01000171
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
1013
1089
+
Pro
CGG
[ENA]
¡û
>W1911579946
PEMJ01000123
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
713
637
-
Pro
CGG
[ENA]
¡û
>W1911579986
PEMK01000125
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
714
638
-
Pro
CGG
[ENA]
¡û
>W1911580033
PEML01000148
Deinococcota
Thermus scotoductus 12_S12 [PEML]
1017
1093
+
Pro
CGG
[ENA]
¡û
>W1911580084
PEMM01000117
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
1720
1796
+
Pro
CGG
[ENA]
¡û
>W1911580137
PEMN01000164
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911580181
PEMO01000140
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1726
1802
+
Pro
CGG
[ENA]
¡û
>W1911580227
PEMP01000146
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
1707
1783
+
Pro
CGG
[ENA]
¡û
>W1911580269
PEMQ01000100
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
1725
1801
+
Pro
CGG
[ENA]
¡û
>W1911580332
PEMR01000114
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911580367
PEMS01000145
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
714
638
-
Pro
CGG
[ENA]
¡û
>W1911580425
PEMT01000145
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
714
638
-
Pro
CGG
[ENA]
¡û
>W1911580467
PEMU01000095
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911580518
PEMV01000162
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
718
642
-
Pro
CGG
[ENA]
¡û
>W1911580567
PEMW01000207
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
706
630
-
Pro
CGG
[ENA]
¡û
>W1810268435
PRDA01000015
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
49598
49674
+
Pro
CGG
[ENA]
¡û
>W1810605100
QGMX01000006
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
25338
25414
+
Pro
CGG
[ENA]
¡û
>W1810889187
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
349837
349761
-
Pro
CGG
[ENA]
¡û
>W1511312789
JPSL02000039
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
232869
232945
+
Pro
CGG
[ENA]
¡û
>W1511401718
JTJB01000041
Deinococcota
Thermus sp. 2.9 [JTJB]
32
108
+
Pro
CGG
[ENA]
¡û
>C11123073
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1293302
1293226
-
Pro
CGG
[Ensembl]
¡û
>C11123184
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
876608
876684
+
Pro
CGG
[Ensembl]
¡û
>C121006398
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1105120
1105196
+
Pro
CGG
[Ensembl]
¡û
>C121009753
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1043357
1043281
-
Pro
CGG
[Ensembl]
¡û
>C161067110
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1115883
1115807
-
Pro
CGG
[Ensembl]
¡û
>W121056017
AIJQ01000002
Deinococcota
Thermus parvatiensis RL [AIJQ]
81949
82025
+
Pro
CGG
[ENA]
¡û
>W1610045340
BBBL01000381
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1681
1757
+
Pro
CGG
[ENA]
¡û
>W1610045422
BBBN01000357
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1690
1766
+
Pro
CGG
[ENA]
¡û
>C131002390
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
895356
895432
+
Pro
CGG
[Ensembl]
¡û
>W1610651377
LJJR01000006
Deinococcota
Thermus scotoductus [LJJR]
29497
29421
-
Pro
CGG
[ENA]
¡û
>W1710042181
BBBL01000381
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1681
1757
+
Pro
CGG
[ENA]
¡û
>W1710042263
BBBN01000357
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1690
1766
+
Pro
CGG
[ENA]
¡û
>W1710514665
FNBC01000041
Deinococcota
Thermus arciformis [FNBC]
6010
5934
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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